Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20539 and SM_b20540 are separated by 867 nucleotides SM_b20540 and SM_b20541 are separated by 587 nucleotides
SM_b20539: SM_b20539 - adenylate cyclase, at 564,786 to 566,660
_b20539
SM_b20540: SM_b20540 - hypothetical protein, at 567,528 to 567,749
_b20540
SM_b20541: SM_b20541 - protein in ISRm14, at 568,337 to 569,989
_b20541
Position (kb) 567
568 Strain fitness (log2 ratio) -1
0
1
2 at 566.543 kb on - strand at 566.665 kb on + strand at 566.723 kb on - strand at 566.726 kb on + strand at 566.726 kb on + strand at 566.726 kb on + strand at 566.727 kb on - strand at 566.727 kb on - strand at 566.727 kb on - strand at 566.727 kb on - strand at 566.727 kb on - strand at 566.727 kb on - strand at 566.728 kb on + strand at 566.728 kb on + strand at 566.729 kb on - strand at 566.738 kb on + strand at 566.738 kb on + strand at 566.745 kb on + strand at 566.745 kb on + strand at 566.745 kb on + strand at 566.746 kb on - strand at 566.746 kb on - strand at 566.888 kb on + strand at 566.889 kb on - strand at 566.889 kb on - strand at 566.965 kb on - strand at 566.968 kb on - strand at 567.114 kb on + strand at 567.115 kb on - strand at 567.118 kb on - strand at 567.194 kb on + strand at 567.194 kb on + strand at 567.195 kb on - strand at 567.199 kb on + strand at 567.199 kb on + strand at 567.200 kb on - strand at 567.204 kb on - strand at 567.204 kb on - strand at 567.232 kb on + strand at 567.235 kb on + strand at 567.375 kb on + strand at 567.423 kb on + strand at 567.439 kb on + strand at 567.440 kb on - strand at 567.472 kb on + strand at 567.473 kb on - strand at 567.484 kb on + strand at 567.484 kb on + strand at 567.484 kb on + strand at 567.485 kb on - strand at 567.485 kb on - strand at 567.487 kb on + strand at 567.488 kb on - strand at 567.488 kb on - strand at 567.488 kb on - strand at 567.489 kb on + strand at 567.489 kb on + strand at 567.490 kb on - strand at 567.490 kb on - strand at 567.515 kb on + strand at 567.598 kb on - strand, within SM_b20540 at 567.816 kb on + strand at 567.833 kb on - strand at 567.872 kb on + strand at 567.970 kb on - strand at 567.990 kb on - strand at 568.167 kb on - strand at 568.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 566,543 - -0.3 566,665 + +0.8 566,723 - -0.0 566,726 + -0.1 566,726 + -0.3 566,726 + +0.7 566,727 - -0.3 566,727 - -0.4 566,727 - -1.6 566,727 - +0.1 566,727 - +0.1 566,727 - +0.3 566,728 + +1.9 566,728 + +0.5 566,729 - -0.4 566,738 + -0.7 566,738 + -0.4 566,745 + -1.6 566,745 + -0.2 566,745 + +0.8 566,746 - +0.3 566,746 - +1.4 566,888 + -0.4 566,889 - +0.5 566,889 - +0.5 566,965 - +0.5 566,968 - -0.8 567,114 + -0.7 567,115 - -1.3 567,118 - +0.3 567,194 + -0.9 567,194 + -0.3 567,195 - -0.6 567,199 + +0.6 567,199 + -1.1 567,200 - -0.1 567,204 - -0.3 567,204 - -0.4 567,232 + +0.5 567,235 + +0.6 567,375 + -0.5 567,423 + +0.2 567,439 + -0.2 567,440 - -0.2 567,472 + +0.2 567,473 - -0.5 567,484 + +0.6 567,484 + +0.4 567,484 + -1.7 567,485 - +0.1 567,485 - +0.2 567,487 + +0.4 567,488 - +0.1 567,488 - -0.0 567,488 - -0.5 567,489 + +0.0 567,489 + -0.0 567,490 - -0.1 567,490 - -0.4 567,515 + -0.3 567,598 - SM_b20540 0.32 -1.2 567,816 + -0.3 567,833 - -0.1 567,872 + -0.1 567,970 - -0.5 567,990 - +0.7 568,167 - +0.3 568,203 + -0.1
Or see this region's nucleotide sequence