Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20168 and SM_b20169 are separated by 128 nucleotides SM_b20169 and SM_b20170 are separated by 169 nucleotides
SM_b20168: SM_b20168 - hypothetical protein, at 186,369 to 187,466
_b20168
SM_b20169: SM_b20169 - hypothetical protein, at 187,595 to 188,236
_b20169
SM_b20170: SM_b20170 - glutathione-dependent formaldehyde dehydrogenase, at 188,406 to 189,533
_b20170
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 186.716 kb on - strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.778 kb on - strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.939 kb on + strand, within SM_b20168 at 187.296 kb on + strand, within SM_b20168 at 187.465 kb on - strand at 187.512 kb on + strand at 187.674 kb on + strand, within SM_b20169 at 187.674 kb on + strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.701 kb on + strand, within SM_b20169 at 187.882 kb on + strand, within SM_b20169 at 188.101 kb on + strand, within SM_b20169 at 188.177 kb on + strand at 188.178 kb on - strand at 188.178 kb on - strand at 188.269 kb on + strand at 188.271 kb on + strand at 188.271 kb on + strand at 188.272 kb on - strand at 188.272 kb on - strand at 188.313 kb on + strand at 188.313 kb on + strand at 188.314 kb on - strand at 188.349 kb on + strand at 188.350 kb on - strand at 188.380 kb on + strand at 188.384 kb on + strand at 188.384 kb on + strand at 188.385 kb on - strand at 188.389 kb on + strand at 188.389 kb on + strand at 188.389 kb on + strand at 188.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 186,716 - SM_b20168 0.32 +0.6 186,777 + SM_b20168 0.37 -0.5 186,777 + SM_b20168 0.37 +0.6 186,778 - SM_b20168 0.37 +0.1 186,833 + SM_b20168 0.42 -0.7 186,833 + SM_b20168 0.42 -1.7 186,834 - SM_b20168 0.42 +1.6 186,834 - SM_b20168 0.42 -0.3 186,939 + SM_b20168 0.52 -0.5 187,296 + SM_b20168 0.84 +1.0 187,465 - -0.6 187,512 + -1.2 187,674 + SM_b20169 0.12 -0.4 187,674 + SM_b20169 0.12 -1.4 187,675 - SM_b20169 0.12 +0.1 187,675 - SM_b20169 0.12 -2.1 187,675 - SM_b20169 0.12 -1.1 187,675 - SM_b20169 0.12 +0.2 187,675 - SM_b20169 0.12 -0.1 187,675 - SM_b20169 0.12 +0.3 187,675 - SM_b20169 0.12 -0.2 187,701 + SM_b20169 0.17 -1.4 187,882 + SM_b20169 0.45 -0.1 188,101 + SM_b20169 0.79 -0.4 188,177 + +0.2 188,178 - -0.8 188,178 - -0.2 188,269 + -0.8 188,271 + -0.3 188,271 + +0.0 188,272 - -0.6 188,272 - -0.4 188,313 + +1.6 188,313 + +0.7 188,314 - -0.2 188,349 + -2.4 188,350 - -0.3 188,380 + -0.4 188,384 + -1.4 188,384 + -0.2 188,385 - +0.1 188,389 + -0.0 188,389 + +0.0 188,389 + -0.1 188,390 - -0.4
Or see this region's nucleotide sequence