Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20055

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20054 and SM_b20055 are separated by 147 nucleotides SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847 _b20054 SM_b20055: SM_b20055 - transcriptional regulator, at 63,995 to 64,984 _b20055 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3at 62.999 kb on - strandat 62.999 kb on - strandat 62.999 kb on - strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.067 kb on - strandat 63.067 kb on - strandat 63.099 kb on + strandat 63.110 kb on + strand, within SM_b20054at 63.351 kb on + strand, within SM_b20054at 63.352 kb on - strand, within SM_b20054at 63.397 kb on - strand, within SM_b20054at 63.699 kb on + strand, within SM_b20054at 63.737 kb on + strand, within SM_b20054at 63.737 kb on + strand, within SM_b20054at 63.807 kb on + strandat 63.807 kb on + strandat 63.807 kb on + strandat 63.895 kb on + strandat 63.895 kb on + strandat 63.895 kb on + strandat 63.896 kb on - strandat 63.963 kb on + strandat 63.963 kb on + strandat 63.964 kb on - strandat 63.964 kb on - strandat 64.561 kb on - strand, within SM_b20055at 64.619 kb on + strand, within SM_b20055at 64.886 kb on + strandat 64.949 kb on + strandat 64.949 kb on + strandat 64.949 kb on + strandat 65.064 kb on - strandat 65.246 kb on - strandat 65.255 kb on + strandat 65.255 kb on + strandat 65.255 kb on + strandat 65.256 kb on - strandat 65.256 kb on - strandat 65.256 kb on - strandat 65.256 kb on - strandat 65.256 kb on - strandat 65.257 kb on + strandat 65.257 kb on + strandat 65.257 kb on + strandat 65.257 kb on + strandat 65.258 kb on - strandat 65.258 kb on - strandat 65.258 kb on - strandat 65.278 kb on - strandat 65.278 kb on - strandat 65.278 kb on - strandat 65.299 kb on + strandat 65.300 kb on - strandat 65.300 kb on - strandat 65.300 kb on - strandat 65.300 kb on - strandat 65.300 kb on - strandat 65.300 kb on - strandat 65.302 kb on - strandat 65.302 kb on - strandat 65.369 kb on + strandat 65.369 kb on + strandat 65.369 kb on + strandat 65.369 kb on + strandat 65.369 kb on + strandat 65.370 kb on - strandat 65.370 kb on - strandat 65.370 kb on - strandat 65.370 kb on - strandat 65.370 kb on - strandat 65.484 kb on + strandat 65.485 kb on - strandat 65.553 kb on - strandat 65.553 kb on - strandat 65.626 kb on + strandat 65.681 kb on + strandat 65.681 kb on + strandat 65.682 kb on - strandat 65.682 kb on - strandat 65.682 kb on - strandat 65.682 kb on - strandat 65.743 kb on + strandat 65.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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62,999 - -0.1
62,999 - +0.3
62,999 - +0.3
63,066 + +0.5
63,066 + +0.2
63,066 + -0.2
63,066 + -0.3
63,067 - -0.0
63,067 - +1.0
63,099 + -0.1
63,110 + SM_b20054 0.11 -0.2
63,351 + SM_b20054 0.40 -0.4
63,352 - SM_b20054 0.40 +1.1
63,397 - SM_b20054 0.46 +0.1
63,699 + SM_b20054 0.82 -0.0
63,737 + SM_b20054 0.87 -1.1
63,737 + SM_b20054 0.87 +1.6
63,807 + -0.5
63,807 + -0.0
63,807 + -0.2
63,895 + -0.4
63,895 + -0.8
63,895 + -0.6
63,896 - +1.6
63,963 + -0.1
63,963 + -0.7
63,964 - -0.2
63,964 - -0.7
64,561 - SM_b20055 0.57 -0.4
64,619 + SM_b20055 0.63 -1.2
64,886 + +0.0
64,949 + +0.4
64,949 + -0.1
64,949 + +0.3
65,064 - -0.1
65,246 - +0.2
65,255 + +0.1
65,255 + +0.9
65,255 + -0.0
65,256 - +0.5
65,256 - +1.0
65,256 - -0.2
65,256 - -0.3
65,256 - +0.2
65,257 + +1.3
65,257 + -2.0
65,257 + -1.1
65,257 + +0.5
65,258 - +0.6
65,258 - -0.3
65,258 - -0.2
65,278 - +0.4
65,278 - +0.3
65,278 - +0.3
65,299 + -0.3
65,300 - -0.4
65,300 - +3.2
65,300 - +0.8
65,300 - +0.5
65,300 - +0.4
65,300 - -0.6
65,302 - +0.8
65,302 - +0.3
65,369 + -0.2
65,369 + -0.3
65,369 + +1.3
65,369 + -0.4
65,369 + -0.3
65,370 - +0.4
65,370 - +0.3
65,370 - -0.7
65,370 - +0.4
65,370 - +0.4
65,484 + +0.7
65,485 - +0.4
65,553 - -0.4
65,553 - +0.7
65,626 + -0.3
65,681 + -0.0
65,681 + -0.4
65,682 - +0.5
65,682 - -0.2
65,682 - +0.3
65,682 - -0.6
65,743 + +0.3
65,921 - -0.0

Or see this region's nucleotide sequence