Strain Fitness in Sinorhizobium meliloti 1021 around SMc03126

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03128 and SMc03127 are separated by 17 nucleotidesSMc03127 and SMc03126 overlap by 4 nucleotidesSMc03126 and SMc03125 overlap by 4 nucleotides SMc03128: SMc03128 - ABC transporter permease, at 3,201,226 to 3,202,107 SMc03128 SMc03127: SMc03127 - ABC transporter permease, at 3,202,125 to 3,203,051 SMc03127 SMc03126: SMc03126 - transport system ATP-binding ABC transporter protein, at 3,203,048 to 3,204,046 SMc03126 SMc03125: SMc03125 - transport system ATP-binding ABC transporter protein, at 3,204,043 to 3,205,056 SMc03125 Position (kb) 3203 3204 3205Strain fitness (log2 ratio) -1 0 1 2at 3202.127 kb on - strandat 3202.127 kb on - strandat 3202.635 kb on - strand, within SMc03127at 3202.700 kb on - strand, within SMc03127at 3202.852 kb on + strand, within SMc03127at 3202.862 kb on - strand, within SMc03127at 3203.301 kb on + strand, within SMc03126at 3204.006 kb on + strandat 3204.707 kb on + strand, within SMc03125

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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3,202,127 - +0.7
3,202,127 - +2.0
3,202,635 - SMc03127 0.55 -0.6
3,202,700 - SMc03127 0.62 +1.0
3,202,852 + SMc03127 0.78 -0.6
3,202,862 - SMc03127 0.80 -0.6
3,203,301 + SMc03126 0.25 +1.7
3,204,006 + -0.6
3,204,707 + SMc03125 0.65 -0.4

Or see this region's nucleotide sequence