Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0669 and SMa0670 are separated by 109 nucleotides SMa0670 and SMa0673 are separated by 596 nucleotides
SMa0669: SMa0669 - hemolysin D, at 356,020 to 357,249
SMa0669
SMa0670: SMa0670 - regulatory protein, at 357,359 to 358,213
SMa0670
SMa0673: SMa0673 - TRm3 transposase, at 358,810 to 360,012
SMa0673
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.441 kb on + strand, within SMa0669 at 356.465 kb on - strand, within SMa0669 at 356.521 kb on - strand, within SMa0669 at 356.730 kb on - strand, within SMa0669 at 356.730 kb on - strand, within SMa0669 at 356.760 kb on + strand, within SMa0669 at 356.760 kb on + strand, within SMa0669 at 356.761 kb on - strand, within SMa0669 at 356.761 kb on - strand, within SMa0669 at 356.761 kb on - strand at 357.037 kb on + strand, within SMa0669 at 357.038 kb on - strand, within SMa0669 at 357.038 kb on - strand, within SMa0669 at 357.038 kb on - strand, within SMa0669 at 357.059 kb on + strand, within SMa0669 at 357.091 kb on + strand, within SMa0669 at 357.113 kb on + strand, within SMa0669 at 357.114 kb on - strand, within SMa0669 at 357.287 kb on + strand at 357.287 kb on + strand at 357.288 kb on - strand at 357.345 kb on + strand at 357.345 kb on + strand at 357.346 kb on - strand at 357.346 kb on - strand at 357.462 kb on - strand, within SMa0670 at 357.586 kb on - strand, within SMa0670 at 357.636 kb on + strand, within SMa0670 at 357.671 kb on + strand, within SMa0670 at 357.671 kb on + strand, within SMa0670 at 357.672 kb on - strand, within SMa0670 at 357.672 kb on - strand, within SMa0670 at 357.683 kb on + strand at 357.684 kb on - strand, within SMa0670 at 357.685 kb on + strand, within SMa0670 at 357.686 kb on - strand, within SMa0670 at 357.687 kb on + strand, within SMa0670 at 357.687 kb on + strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.688 kb on - strand, within SMa0670 at 357.847 kb on - strand, within SMa0670 at 357.847 kb on - strand, within SMa0670 at 357.847 kb on - strand, within SMa0670 at 357.857 kb on - strand, within SMa0670 at 357.857 kb on - strand, within SMa0670 at 357.874 kb on - strand, within SMa0670 at 357.940 kb on - strand, within SMa0670 at 357.980 kb on + strand, within SMa0670 at 357.992 kb on + strand, within SMa0670 at 358.057 kb on + strand, within SMa0670 at 358.081 kb on + strand, within SMa0670 at 358.090 kb on + strand, within SMa0670 at 358.109 kb on + strand, within SMa0670 at 358.258 kb on - strand at 358.287 kb on + strand at 358.329 kb on - strand at 358.464 kb on + strand at 358.464 kb on + strand at 358.465 kb on - strand at 358.466 kb on + strand at 358.467 kb on - strand at 358.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 356,441 + SMa0669 0.34 -0.8 356,465 - SMa0669 0.36 +0.7 356,521 - SMa0669 0.41 +0.3 356,730 - SMa0669 0.58 -0.1 356,730 - SMa0669 0.58 -0.4 356,760 + SMa0669 0.60 +0.2 356,760 + SMa0669 0.60 -0.3 356,761 - SMa0669 0.60 +0.2 356,761 - SMa0669 0.60 +0.5 356,761 - -1.1 357,037 + SMa0669 0.83 -0.3 357,038 - SMa0669 0.83 +0.2 357,038 - SMa0669 0.83 -0.1 357,038 - SMa0669 0.83 +1.9 357,059 + SMa0669 0.84 -0.3 357,091 + SMa0669 0.87 -0.2 357,113 + SMa0669 0.89 +0.3 357,114 - SMa0669 0.89 +0.6 357,287 + -0.1 357,287 + -0.2 357,288 - -1.9 357,345 + -0.1 357,345 + -0.1 357,346 - +0.6 357,346 - -0.4 357,462 - SMa0670 0.12 -0.6 357,586 - SMa0670 0.27 -0.5 357,636 + SMa0670 0.32 -0.2 357,671 + SMa0670 0.36 +0.9 357,671 + SMa0670 0.36 +1.0 357,672 - SMa0670 0.37 +0.7 357,672 - SMa0670 0.37 -0.6 357,683 + +0.7 357,684 - SMa0670 0.38 -0.7 357,685 + SMa0670 0.38 +0.5 357,686 - SMa0670 0.38 -0.6 357,687 + SMa0670 0.38 -0.2 357,687 + SMa0670 0.38 +0.4 357,688 - SMa0670 0.38 -0.5 357,688 - SMa0670 0.38 -0.4 357,688 - SMa0670 0.38 -0.6 357,688 - SMa0670 0.38 -1.4 357,688 - SMa0670 0.38 -0.8 357,847 - SMa0670 0.57 -1.7 357,847 - SMa0670 0.57 -1.0 357,847 - SMa0670 0.57 -0.4 357,857 - SMa0670 0.58 +0.5 357,857 - SMa0670 0.58 +0.7 357,874 - SMa0670 0.60 -0.2 357,940 - SMa0670 0.68 -0.3 357,980 + SMa0670 0.73 -1.1 357,992 + SMa0670 0.74 -0.4 358,057 + SMa0670 0.82 -0.1 358,081 + SMa0670 0.84 -1.0 358,090 + SMa0670 0.85 -0.4 358,109 + SMa0670 0.88 +0.4 358,258 - -1.7 358,287 + +0.0 358,329 - +0.0 358,464 + -0.0 358,464 + +1.1 358,465 - -0.6 358,466 + +0.0 358,467 - -0.4 358,734 + -0.5
Or see this region's nucleotide sequence