Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21005 and SM_b21006 are separated by 9 nucleotides SM_b21006 and SM_b21007 are separated by 37 nucleotides SM_b21007 and SM_b21008 overlap by 4 nucleotides SM_b21008 and SM_b21009 are separated by 247 nucleotides
SM_b21005: SM_b21005 - hypothetical protein, at 1,240,562 to 1,241,029
_b21005
SM_b21006: SM_b21006 - hypothetical protein, at 1,241,039 to 1,241,281
_b21006
SM_b21007: SM_b21007 - hypothetical protein, at 1,241,319 to 1,241,738
_b21007
SM_b21008: SM_b21008 - ArsR family transcriptional regulator, at 1,241,735 to 1,242,067
_b21008
SM_b21009: SM_b21009 - Glycerol kinase (EC 2.7.1.30) <small>(from data)</small>, at 1,242,315 to 1,243,808
_b21009
Position (kb) 1241
1242
1243 Strain fitness (log2 ratio) -2
-1
0
1 at 1240.779 kb on + strand, within SM_b21005 at 1240.780 kb on - strand, within SM_b21005 at 1240.891 kb on - strand, within SM_b21005 at 1240.891 kb on - strand, within SM_b21005 at 1240.891 kb on - strand, within SM_b21005 at 1241.079 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.097 kb on + strand, within SM_b21006 at 1241.097 kb on + strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.153 kb on + strand, within SM_b21006 at 1241.240 kb on + strand, within SM_b21006 at 1241.240 kb on + strand, within SM_b21006 at 1241.240 kb on + strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.524 kb on + strand, within SM_b21007 at 1241.525 kb on - strand, within SM_b21007 at 1241.757 kb on - strand at 1241.757 kb on - strand at 1241.850 kb on + strand, within SM_b21008 at 1241.850 kb on + strand, within SM_b21008 at 1241.851 kb on - strand at 1241.851 kb on - strand, within SM_b21008 at 1241.853 kb on + strand, within SM_b21008 at 1241.853 kb on + strand, within SM_b21008 at 1241.854 kb on - strand, within SM_b21008 at 1241.854 kb on - strand, within SM_b21008 at 1241.854 kb on - strand, within SM_b21008 at 1241.854 kb on - strand, within SM_b21008 at 1241.854 kb on - strand, within SM_b21008 at 1242.108 kb on - strand at 1242.140 kb on + strand at 1242.193 kb on - strand at 1242.658 kb on + strand, within SM_b21009 at 1242.705 kb on - strand, within SM_b21009 at 1242.787 kb on + strand, within SM_b21009 at 1242.892 kb on - strand, within SM_b21009 at 1242.916 kb on + strand, within SM_b21009 at 1242.916 kb on + strand, within SM_b21009 at 1242.917 kb on - strand, within SM_b21009 at 1242.917 kb on - strand, within SM_b21009 at 1243.017 kb on - strand, within SM_b21009 at 1243.020 kb on + strand, within SM_b21009 at 1243.021 kb on + strand, within SM_b21009 at 1243.022 kb on - strand, within SM_b21009 at 1243.022 kb on - strand, within SM_b21009 at 1243.022 kb on - strand, within SM_b21009 at 1243.022 kb on - strand, within SM_b21009
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 1,240,779 + SM_b21005 0.46 -0.1 1,240,780 - SM_b21005 0.47 +0.6 1,240,891 - SM_b21005 0.70 -0.7 1,240,891 - SM_b21005 0.70 -0.4 1,240,891 - SM_b21005 0.70 -0.3 1,241,079 + SM_b21006 0.16 -0.3 1,241,095 + SM_b21006 0.23 -0.1 1,241,095 + SM_b21006 0.23 +0.0 1,241,095 + SM_b21006 0.23 -0.1 1,241,095 + SM_b21006 0.23 -0.4 1,241,096 - SM_b21006 0.23 +0.7 1,241,096 - SM_b21006 0.23 -0.4 1,241,096 - SM_b21006 0.23 -0.2 1,241,096 - SM_b21006 0.23 +0.1 1,241,097 + SM_b21006 0.24 +0.1 1,241,097 + SM_b21006 0.24 +0.6 1,241,098 - SM_b21006 0.24 -0.5 1,241,098 - SM_b21006 0.24 -1.0 1,241,098 - SM_b21006 0.24 +1.2 1,241,098 - SM_b21006 0.24 -0.1 1,241,098 - SM_b21006 0.24 +1.7 1,241,098 - SM_b21006 0.24 +0.7 1,241,098 - SM_b21006 0.24 +0.0 1,241,153 + SM_b21006 0.47 -0.1 1,241,240 + SM_b21006 0.83 -0.3 1,241,240 + SM_b21006 0.83 -0.0 1,241,240 + SM_b21006 0.83 +0.9 1,241,241 - SM_b21006 0.83 +0.1 1,241,241 - SM_b21006 0.83 -0.5 1,241,241 - SM_b21006 0.83 -0.4 1,241,241 - SM_b21006 0.83 -0.1 1,241,524 + SM_b21007 0.49 -0.4 1,241,525 - SM_b21007 0.49 -0.8 1,241,757 - -1.5 1,241,757 - +1.2 1,241,850 + SM_b21008 0.35 -2.3 1,241,850 + SM_b21008 0.35 -0.9 1,241,851 - -1.5 1,241,851 - SM_b21008 0.35 -0.2 1,241,853 + SM_b21008 0.35 -1.3 1,241,853 + SM_b21008 0.35 -1.0 1,241,854 - SM_b21008 0.36 -1.5 1,241,854 - SM_b21008 0.36 -0.3 1,241,854 - SM_b21008 0.36 +0.0 1,241,854 - SM_b21008 0.36 +0.0 1,241,854 - SM_b21008 0.36 -1.1 1,242,108 - -0.6 1,242,140 + -0.0 1,242,193 - +0.1 1,242,658 + SM_b21009 0.23 +0.6 1,242,705 - SM_b21009 0.26 -0.2 1,242,787 + SM_b21009 0.32 -0.2 1,242,892 - SM_b21009 0.39 -0.1 1,242,916 + SM_b21009 0.40 -0.2 1,242,916 + SM_b21009 0.40 -0.1 1,242,917 - SM_b21009 0.40 +0.3 1,242,917 - SM_b21009 0.40 +0.5 1,243,017 - SM_b21009 0.47 -0.1 1,243,020 + SM_b21009 0.47 -0.9 1,243,021 + SM_b21009 0.47 -0.6 1,243,022 - SM_b21009 0.47 -1.1 1,243,022 - SM_b21009 0.47 +0.3 1,243,022 - SM_b21009 0.47 -0.0 1,243,022 - SM_b21009 0.47 +0.6
Or see this region's nucleotide sequence