Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20373

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20372 and SM_b20373 are separated by 11 nucleotidesSM_b20373 and SM_b20374 are separated by 79 nucleotides SM_b20372: SM_b20372 - hypothetical protein, at 383,818 to 385,095 _b20372 SM_b20373: SM_b20373 - TRAP dicarboxylate transporter, at 385,107 to 385,574 _b20373 SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646 _b20374 Position (kb) 385 386Strain fitness (log2 ratio) -1 0 1 2at 384.267 kb on + strand, within SM_b20372at 384.268 kb on - strand, within SM_b20372at 384.359 kb on + strand, within SM_b20372at 384.359 kb on + strand, within SM_b20372at 384.360 kb on - strand, within SM_b20372at 384.360 kb on - strand, within SM_b20372at 384.360 kb on - strand, within SM_b20372at 384.360 kb on - strand, within SM_b20372at 384.547 kb on + strand, within SM_b20372at 384.548 kb on - strand, within SM_b20372at 384.627 kb on - strand, within SM_b20372at 384.627 kb on - strand, within SM_b20372at 384.853 kb on - strand, within SM_b20372at 384.956 kb on + strand, within SM_b20372at 384.956 kb on + strand, within SM_b20372at 384.957 kb on - strand, within SM_b20372at 384.957 kb on - strand, within SM_b20372at 385.003 kb on + strandat 385.003 kb on + strandat 385.003 kb on + strandat 385.004 kb on - strandat 385.004 kb on - strandat 385.034 kb on + strandat 385.259 kb on + strand, within SM_b20373at 385.380 kb on - strand, within SM_b20373at 385.593 kb on + strandat 385.594 kb on - strandat 385.655 kb on + strandat 386.205 kb on - strand, within SM_b20374at 386.315 kb on + strand, within SM_b20374at 386.517 kb on - strand, within SM_b20374at 386.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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384,267 + SM_b20372 0.35 -0.2
384,268 - SM_b20372 0.35 +0.1
384,359 + SM_b20372 0.42 +0.3
384,359 + SM_b20372 0.42 +0.7
384,360 - SM_b20372 0.42 +0.1
384,360 - SM_b20372 0.42 +1.8
384,360 - SM_b20372 0.42 +1.0
384,360 - SM_b20372 0.42 -0.1
384,547 + SM_b20372 0.57 -0.1
384,548 - SM_b20372 0.57 -0.4
384,627 - SM_b20372 0.63 -0.7
384,627 - SM_b20372 0.63 -0.0
384,853 - SM_b20372 0.81 +0.3
384,956 + SM_b20372 0.89 +0.1
384,956 + SM_b20372 0.89 -0.2
384,957 - SM_b20372 0.89 -0.3
384,957 - SM_b20372 0.89 +0.5
385,003 + +0.5
385,003 + -1.0
385,003 + +1.5
385,004 - +0.1
385,004 - -0.1
385,034 + +0.0
385,259 + SM_b20373 0.32 +0.9
385,380 - SM_b20373 0.58 +0.2
385,593 + +0.1
385,594 - -1.2
385,655 + -0.5
386,205 - SM_b20374 0.55 +0.0
386,315 + SM_b20374 0.67 -0.5
386,517 - SM_b20374 0.87 +0.2
386,556 - -0.1

Or see this region's nucleotide sequence