Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20331 and SM_b20332 are separated by 691 nucleotides SM_b20332 and SM_b20333 are separated by 143 nucleotides
SM_b20331: SM_b20331 - hypothetical protein, at 334,596 to 334,952
_b20331
SM_b20332: SM_b20332 - hypothetical protein, at 335,644 to 336,585
_b20332
SM_b20333: SM_b20333 - transporter protein, at 336,729 to 338,849
_b20333
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.004 kb on + strand at 335.004 kb on + strand at 335.004 kb on + strand at 335.043 kb on + strand at 335.136 kb on + strand at 335.147 kb on + strand at 335.148 kb on - strand at 335.148 kb on - strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.155 kb on - strand at 335.155 kb on - strand at 335.155 kb on - strand at 335.158 kb on + strand at 335.159 kb on - strand at 335.159 kb on - strand at 335.236 kb on + strand at 335.327 kb on - strand at 335.395 kb on + strand at 335.396 kb on - strand at 335.396 kb on - strand at 335.423 kb on + strand at 335.423 kb on + strand at 335.424 kb on - strand at 335.566 kb on - strand at 335.566 kb on - strand at 335.747 kb on + strand, within SM_b20332 at 335.747 kb on + strand, within SM_b20332 at 335.795 kb on - strand, within SM_b20332 at 335.887 kb on + strand, within SM_b20332 at 335.888 kb on - strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 336.148 kb on + strand, within SM_b20332 at 336.202 kb on + strand, within SM_b20332 at 336.206 kb on - strand, within SM_b20332 at 336.206 kb on - strand, within SM_b20332 at 336.206 kb on - strand, within SM_b20332 at 336.469 kb on + strand, within SM_b20332 at 336.469 kb on + strand, within SM_b20332 at 336.470 kb on - strand, within SM_b20332 at 336.508 kb on + strand at 336.509 kb on - strand at 336.509 kb on - strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.511 kb on - strand at 336.511 kb on - strand at 336.618 kb on + strand at 336.618 kb on + strand at 336.654 kb on - strand at 336.665 kb on - strand at 336.671 kb on - strand at 336.691 kb on + strand at 336.730 kb on + strand at 336.730 kb on + strand at 336.731 kb on - strand at 336.777 kb on + strand at 336.790 kb on + strand at 336.919 kb on - strand at 336.964 kb on + strand, within SM_b20333 at 336.965 kb on - strand, within SM_b20333 at 337.473 kb on + strand, within SM_b20333 at 337.473 kb on + strand, within SM_b20333 at 337.473 kb on + strand, within SM_b20333 at 337.526 kb on - strand, within SM_b20333
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 335,004 + -0.5 335,004 + -0.2 335,004 + -0.3 335,043 + -0.4 335,136 + -0.7 335,147 + +0.2 335,148 - +0.3 335,148 - +1.2 335,154 + +0.4 335,154 + +0.5 335,154 + -0.6 335,154 + -0.5 335,155 - +0.1 335,155 - +0.2 335,155 - +0.2 335,158 + -0.3 335,159 - +0.8 335,159 - +0.3 335,236 + +0.2 335,327 - +0.5 335,395 + -0.2 335,396 - -0.8 335,396 - +0.1 335,423 + -0.7 335,423 + -0.1 335,424 - +2.5 335,566 - -0.4 335,566 - +0.3 335,747 + SM_b20332 0.11 -1.5 335,747 + SM_b20332 0.11 -1.6 335,795 - SM_b20332 0.16 -0.0 335,887 + SM_b20332 0.26 +0.3 335,888 - SM_b20332 0.26 -1.1 335,920 + SM_b20332 0.29 -0.0 335,920 + SM_b20332 0.29 -1.0 335,920 + SM_b20332 0.29 -1.0 335,921 - SM_b20332 0.29 +0.5 335,921 - SM_b20332 0.29 +0.7 335,921 - SM_b20332 0.29 -0.6 336,148 + SM_b20332 0.54 -0.2 336,202 + SM_b20332 0.59 -0.3 336,206 - SM_b20332 0.60 -0.6 336,206 - SM_b20332 0.60 +0.8 336,206 - SM_b20332 0.60 -0.6 336,469 + SM_b20332 0.88 -0.4 336,469 + SM_b20332 0.88 -0.9 336,470 - SM_b20332 0.88 -1.0 336,508 + -0.3 336,509 - -0.5 336,509 - -0.6 336,510 + -0.4 336,510 + -0.4 336,510 + +0.3 336,510 + +0.4 336,510 + +0.6 336,511 - +0.6 336,511 - +1.5 336,618 + -0.2 336,618 + +1.5 336,654 - -2.3 336,665 - -0.7 336,671 - -0.7 336,691 + -1.7 336,730 + +0.5 336,730 + +0.2 336,731 - +0.3 336,777 + -0.2 336,790 + -0.3 336,919 - +1.0 336,964 + SM_b20333 0.11 -0.2 336,965 - SM_b20333 0.11 +0.1 337,473 + SM_b20333 0.35 +0.1 337,473 + SM_b20333 0.35 -0.4 337,473 + SM_b20333 0.35 +0.1 337,526 - SM_b20333 0.38 -0.4
Or see this region's nucleotide sequence