Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03065 and SMc03066 are separated by 101 nucleotides SMc03066 and SMc03067 are separated by 270 nucleotides
SMc03065: SMc03065 - ABC transporter for D-maltose/D-trehalose/sucrose, ATPase component (AglK) <small>(from data)</small>, at 763,243 to 764,331
SMc03065
SMc03066: SMc03066 - hypothetical protein, at 764,433 to 764,843
SMc03066
SMc03067: SMc03067 - transposase, at 765,114 to 766,277
SMc03067
Position (kb) 764
765 Strain fitness (log2 ratio) -2
-1
0
1 at 763.492 kb on + strand, within SMc03065 at 763.493 kb on - strand, within SMc03065 at 763.493 kb on - strand, within SMc03065 at 763.501 kb on + strand, within SMc03065 at 763.509 kb on + strand, within SMc03065 at 763.509 kb on + strand, within SMc03065 at 763.509 kb on + strand, within SMc03065 at 763.510 kb on - strand, within SMc03065 at 763.600 kb on - strand, within SMc03065 at 763.810 kb on + strand, within SMc03065 at 763.810 kb on + strand, within SMc03065 at 763.810 kb on + strand, within SMc03065 at 763.810 kb on + strand, within SMc03065 at 763.810 kb on + strand, within SMc03065 at 763.811 kb on - strand, within SMc03065 at 763.811 kb on - strand, within SMc03065 at 763.910 kb on - strand, within SMc03065 at 764.185 kb on + strand, within SMc03065 at 764.185 kb on + strand, within SMc03065 at 764.186 kb on - strand, within SMc03065 at 764.186 kb on - strand, within SMc03065 at 764.321 kb on - strand at 764.329 kb on + strand at 764.398 kb on - strand at 764.493 kb on + strand, within SMc03066 at 764.564 kb on + strand, within SMc03066 at 764.665 kb on - strand, within SMc03066 at 764.835 kb on + strand at 764.835 kb on + strand at 764.835 kb on + strand at 764.836 kb on - strand at 764.891 kb on - strand at 764.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 763,492 + SMc03065 0.23 -0.2 763,493 - SMc03065 0.23 +0.6 763,493 - SMc03065 0.23 -0.3 763,501 + SMc03065 0.24 +0.7 763,509 + SMc03065 0.24 +0.7 763,509 + SMc03065 0.24 -0.1 763,509 + SMc03065 0.24 -0.1 763,510 - SMc03065 0.25 +0.2 763,600 - SMc03065 0.33 -0.0 763,810 + SMc03065 0.52 -0.5 763,810 + SMc03065 0.52 -0.3 763,810 + SMc03065 0.52 +0.2 763,810 + SMc03065 0.52 -0.2 763,810 + SMc03065 0.52 +0.1 763,811 - SMc03065 0.52 -0.0 763,811 - SMc03065 0.52 -0.5 763,910 - SMc03065 0.61 -0.2 764,185 + SMc03065 0.87 -0.8 764,185 + SMc03065 0.87 +0.3 764,186 - SMc03065 0.87 -0.5 764,186 - SMc03065 0.87 +0.4 764,321 - -0.9 764,329 + +0.8 764,398 - -1.2 764,493 + SMc03066 0.15 +0.6 764,564 + SMc03066 0.32 -1.1 764,665 - SMc03066 0.56 -1.3 764,835 + +0.2 764,835 + +0.2 764,835 + -0.4 764,836 - -0.3 764,891 - -0.2 764,893 - -2.0
Or see this region's nucleotide sequence