Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02281 and SMc02282 are separated by 14 nucleotides SMc02282 and SMc02283 are separated by 39 nucleotides SMc02283 and SMc02284 are separated by 21 nucleotides SMc02284 and SMc02285 are separated by 96 nucleotides
SMc02281: SMc02281 - hypothetical protein, at 653,617 to 655,062
SMc02281
SMc02282: SMc02282 - copper-containing oxidoreductase, at 655,077 to 656,426
SMc02282
SMc02283: SMc02283 - copper-containing oxidoreductase signal peptide protein, at 656,466 to 656,945
SMc02283
SMc02284: SMc02284 - signal peptide protein, at 656,967 to 657,251
SMc02284
SMc02285: SMc02285 - adenylate cyclase transmembrane protein, at 657,348 to 658,595
SMc02285
Position (kb) 655
656
657 Strain fitness (log2 ratio) -1
0
1
2
3 at 654.298 kb on + strand, within SMc02281 at 654.298 kb on + strand, within SMc02281 at 654.532 kb on + strand, within SMc02281 at 654.533 kb on - strand, within SMc02281 at 654.556 kb on + strand, within SMc02281 at 654.556 kb on + strand, within SMc02281 at 654.557 kb on - strand, within SMc02281 at 654.714 kb on + strand, within SMc02281 at 654.715 kb on - strand, within SMc02281 at 654.817 kb on + strand, within SMc02281 at 654.874 kb on + strand, within SMc02281 at 654.874 kb on + strand, within SMc02281 at 654.875 kb on - strand, within SMc02281 at 655.003 kb on + strand at 655.097 kb on - strand at 655.097 kb on - strand at 655.151 kb on + strand at 655.542 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.702 kb on - strand, within SMc02282 at 655.722 kb on + strand, within SMc02282 at 655.722 kb on + strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.758 kb on - strand, within SMc02282 at 655.758 kb on - strand, within SMc02282 at 655.781 kb on - strand, within SMc02282 at 655.980 kb on + strand, within SMc02282 at 655.998 kb on + strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.130 kb on + strand, within SMc02282 at 656.130 kb on + strand, within SMc02282 at 656.131 kb on - strand, within SMc02282 at 656.200 kb on + strand, within SMc02282 at 656.462 kb on + strand at 656.462 kb on + strand at 656.463 kb on - strand at 656.902 kb on - strand at 656.943 kb on + strand at 656.943 kb on + strand at 656.943 kb on + strand at 657.022 kb on - strand, within SMc02284 at 657.249 kb on + strand at 657.250 kb on - strand at 657.321 kb on + strand at 657.354 kb on + strand at 657.354 kb on + strand at 657.354 kb on + strand at 657.355 kb on - strand at 657.355 kb on - strand at 657.355 kb on - strand at 657.356 kb on + strand at 657.357 kb on - strand at 657.357 kb on - strand at 657.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 654,298 + SMc02281 0.47 -0.5 654,298 + SMc02281 0.47 +2.2 654,532 + SMc02281 0.63 +0.7 654,533 - SMc02281 0.63 -0.4 654,556 + SMc02281 0.65 +1.6 654,556 + SMc02281 0.65 +1.0 654,557 - SMc02281 0.65 -0.2 654,714 + SMc02281 0.76 -0.1 654,715 - SMc02281 0.76 +0.3 654,817 + SMc02281 0.83 +0.2 654,874 + SMc02281 0.87 +0.8 654,874 + SMc02281 0.87 +0.3 654,875 - SMc02281 0.87 +0.1 655,003 + +0.4 655,097 - -0.3 655,097 - -0.6 655,151 + -0.6 655,542 + SMc02282 0.34 +0.2 655,578 + SMc02282 0.37 +0.4 655,578 + SMc02282 0.37 -0.3 655,578 + SMc02282 0.37 -0.7 655,578 + SMc02282 0.37 +0.7 655,702 - SMc02282 0.46 -0.0 655,722 + SMc02282 0.48 +0.1 655,722 + SMc02282 0.48 -0.9 655,723 - SMc02282 0.48 +0.6 655,723 - SMc02282 0.48 +1.6 655,723 - SMc02282 0.48 -0.5 655,723 - SMc02282 0.48 -0.5 655,758 - SMc02282 0.50 -0.1 655,758 - SMc02282 0.50 -0.2 655,781 - SMc02282 0.52 +0.3 655,980 + SMc02282 0.67 +0.4 655,998 + SMc02282 0.68 -0.2 656,028 - SMc02282 0.70 -0.3 656,028 - SMc02282 0.70 +0.8 656,028 - SMc02282 0.70 +0.0 656,028 - SMc02282 0.70 -0.1 656,130 + SMc02282 0.78 +0.3 656,130 + SMc02282 0.78 +0.2 656,131 - SMc02282 0.78 -0.6 656,200 + SMc02282 0.83 -0.0 656,462 + -0.6 656,462 + +0.2 656,463 - -0.6 656,902 - -0.6 656,943 + +0.7 656,943 + +1.6 656,943 + +0.5 657,022 - SMc02284 0.19 +2.9 657,249 + +0.8 657,250 - -0.2 657,321 + -1.0 657,354 + -1.6 657,354 + -0.1 657,354 + +0.6 657,355 - +0.4 657,355 - +1.0 657,355 - +0.6 657,356 + -0.3 657,357 - +0.1 657,357 - -0.4 657,357 - -1.0
Or see this region's nucleotide sequence