Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00335 and SMc00336 are separated by 413 nucleotides SMc00336 and SMc00337 are separated by 139 nucleotides SMc00337 and SMc00338 are separated by 63 nucleotides
SMc00335: SMc00335 - 30S ribosomal protein S1, at 289,147 to 290,853
SMc00335
SMc00336: SMc00336 - hypothetical protein, at 291,267 to 292,847
SMc00336
SMc00337: SMc00337 - hypothetical protein, at 292,987 to 293,319
SMc00337
SMc00338: SMc00338 - hypothetical protein, at 293,383 to 293,910
SMc00338
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1 at 291.143 kb on + strand at 291.143 kb on + strand at 291.151 kb on + strand at 291.187 kb on - strand at 291.187 kb on - strand at 291.301 kb on + strand at 291.301 kb on + strand at 291.810 kb on + strand, within SMc00336 at 291.881 kb on + strand, within SMc00336 at 291.881 kb on + strand, within SMc00336 at 291.882 kb on - strand, within SMc00336 at 291.882 kb on - strand, within SMc00336 at 292.326 kb on - strand, within SMc00336 at 292.686 kb on + strand, within SMc00336 at 292.860 kb on + strand at 292.860 kb on + strand at 292.860 kb on + strand at 292.860 kb on + strand at 292.861 kb on - strand at 292.875 kb on + strand at 292.886 kb on - strand at 293.057 kb on - strand, within SMc00337 at 293.266 kb on + strand, within SMc00337 at 293.374 kb on + strand at 293.399 kb on + strand at 293.411 kb on + strand at 293.423 kb on + strand at 293.423 kb on + strand at 293.423 kb on + strand at 293.424 kb on - strand at 293.424 kb on - strand at 293.453 kb on + strand, within SMc00338 at 293.453 kb on + strand, within SMc00338 at 293.453 kb on + strand, within SMc00338 at 293.454 kb on - strand, within SMc00338 at 293.523 kb on - strand, within SMc00338 at 293.525 kb on + strand, within SMc00338 at 293.525 kb on + strand, within SMc00338 at 293.526 kb on - strand, within SMc00338 at 293.526 kb on - strand, within SMc00338 at 293.526 kb on - strand, within SMc00338 at 293.526 kb on - strand, within SMc00338 at 293.536 kb on - strand, within SMc00338 at 293.536 kb on - strand at 293.552 kb on + strand, within SMc00338 at 293.553 kb on - strand, within SMc00338 at 293.576 kb on + strand, within SMc00338 at 293.576 kb on + strand, within SMc00338 at 293.577 kb on - strand, within SMc00338 at 293.577 kb on - strand, within SMc00338 at 293.577 kb on - strand, within SMc00338 at 293.577 kb on - strand, within SMc00338 at 293.577 kb on - strand, within SMc00338 at 293.579 kb on + strand, within SMc00338 at 293.591 kb on + strand, within SMc00338 at 293.592 kb on - strand, within SMc00338 at 293.592 kb on - strand, within SMc00338 at 293.607 kb on - strand, within SMc00338 at 293.607 kb on - strand, within SMc00338 at 293.609 kb on + strand, within SMc00338 at 293.609 kb on + strand, within SMc00338 at 293.610 kb on - strand, within SMc00338 at 293.610 kb on - strand, within SMc00338 at 293.613 kb on - strand, within SMc00338 at 293.643 kb on - strand, within SMc00338 at 293.657 kb on + strand, within SMc00338 at 293.658 kb on - strand, within SMc00338 at 293.681 kb on + strand, within SMc00338 at 293.703 kb on - strand, within SMc00338 at 293.720 kb on + strand, within SMc00338 at 293.720 kb on + strand, within SMc00338 at 293.724 kb on - strand, within SMc00338 at 293.724 kb on - strand, within SMc00338 at 293.738 kb on + strand, within SMc00338 at 293.757 kb on - strand, within SMc00338 at 293.845 kb on + strand, within SMc00338 at 293.846 kb on - strand, within SMc00338
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 291,143 + -0.8 291,143 + +1.7 291,151 + +0.1 291,187 - -0.4 291,187 - +0.1 291,301 + -0.3 291,301 + +0.3 291,810 + SMc00336 0.34 -1.3 291,881 + SMc00336 0.39 +0.4 291,881 + SMc00336 0.39 -0.4 291,882 - SMc00336 0.39 +1.3 291,882 - SMc00336 0.39 -0.1 292,326 - SMc00336 0.67 +0.3 292,686 + SMc00336 0.90 +0.1 292,860 + +0.4 292,860 + -0.3 292,860 + -0.2 292,860 + -0.5 292,861 - -0.4 292,875 + -0.8 292,886 - -0.0 293,057 - SMc00337 0.21 +1.7 293,266 + SMc00337 0.84 +0.8 293,374 + +0.2 293,399 + +0.5 293,411 + +0.2 293,423 + +0.1 293,423 + +0.3 293,423 + -0.3 293,424 - +0.3 293,424 - +1.4 293,453 + SMc00338 0.13 +0.2 293,453 + SMc00338 0.13 -0.9 293,453 + SMc00338 0.13 -0.0 293,454 - SMc00338 0.13 -0.1 293,523 - SMc00338 0.27 +0.5 293,525 + SMc00338 0.27 +0.4 293,525 + SMc00338 0.27 -0.7 293,526 - SMc00338 0.27 +0.5 293,526 - SMc00338 0.27 +1.1 293,526 - SMc00338 0.27 -0.3 293,526 - SMc00338 0.27 +0.3 293,536 - SMc00338 0.29 +0.4 293,536 - +1.1 293,552 + SMc00338 0.32 -0.3 293,553 - SMc00338 0.32 -0.6 293,576 + SMc00338 0.37 -0.4 293,576 + SMc00338 0.37 -0.0 293,577 - SMc00338 0.37 +0.8 293,577 - SMc00338 0.37 +0.3 293,577 - SMc00338 0.37 +0.7 293,577 - SMc00338 0.37 -0.2 293,577 - SMc00338 0.37 -0.1 293,579 + SMc00338 0.37 -0.4 293,591 + SMc00338 0.39 -1.3 293,592 - SMc00338 0.40 -0.7 293,592 - SMc00338 0.40 -0.3 293,607 - SMc00338 0.42 +0.4 293,607 - SMc00338 0.42 +0.1 293,609 + SMc00338 0.43 -0.0 293,609 + SMc00338 0.43 +0.1 293,610 - SMc00338 0.43 +0.1 293,610 - SMc00338 0.43 -1.2 293,613 - SMc00338 0.44 -0.3 293,643 - SMc00338 0.49 -0.2 293,657 + SMc00338 0.52 -0.3 293,658 - SMc00338 0.52 -0.1 293,681 + SMc00338 0.56 -0.8 293,703 - SMc00338 0.61 -0.2 293,720 + SMc00338 0.64 +0.2 293,720 + SMc00338 0.64 +0.5 293,724 - SMc00338 0.65 +0.1 293,724 - SMc00338 0.65 -0.2 293,738 + SMc00338 0.67 -0.3 293,757 - SMc00338 0.71 -0.6 293,845 + SMc00338 0.88 +0.0 293,846 - SMc00338 0.88 +0.2
Or see this region's nucleotide sequence