Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0576 and SMa0579 are separated by 190 nucleotides SMa0579 and SMa0581 are separated by 435 nucleotides
SMa0576: SMa0576 - Leu or Leu/Val/Ile transport binding protein, at 306,248 to 307,339
SMa0576
SMa0579: SMa0579 - guanylate cyclase, at 307,530 to 309,989
SMa0579
SMa0581: SMa0581 - nitrate ABC transporter ATP-binding protein, at 310,425 to 311,225
SMa0581
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -1
0
1
2
3 at 306.533 kb on + strand, within SMa0576 at 306.533 kb on + strand, within SMa0576 at 306.569 kb on + strand, within SMa0576 at 306.569 kb on + strand, within SMa0576 at 306.570 kb on - strand, within SMa0576 at 306.696 kb on - strand, within SMa0576 at 306.819 kb on - strand, within SMa0576 at 306.827 kb on + strand, within SMa0576 at 306.884 kb on - strand, within SMa0576 at 306.909 kb on - strand, within SMa0576 at 306.928 kb on + strand, within SMa0576 at 306.928 kb on + strand, within SMa0576 at 306.929 kb on - strand, within SMa0576 at 307.009 kb on + strand, within SMa0576 at 307.142 kb on + strand, within SMa0576 at 307.143 kb on - strand, within SMa0576 at 307.209 kb on + strand, within SMa0576 at 307.297 kb on - strand at 307.300 kb on + strand at 307.301 kb on + strand at 307.302 kb on - strand at 307.302 kb on - strand at 307.302 kb on - strand at 307.338 kb on - strand at 307.354 kb on + strand at 307.442 kb on - strand at 307.610 kb on - strand at 307.620 kb on + strand at 307.620 kb on + strand at 307.621 kb on - strand at 307.621 kb on - strand at 307.621 kb on - strand at 307.658 kb on - strand at 307.658 kb on - strand at 307.819 kb on + strand, within SMa0579 at 307.819 kb on + strand, within SMa0579 at 307.819 kb on + strand, within SMa0579 at 307.819 kb on + strand, within SMa0579 at 307.819 kb on + strand, within SMa0579 at 307.819 kb on + strand, within SMa0579 at 307.820 kb on - strand, within SMa0579 at 307.820 kb on - strand, within SMa0579 at 307.820 kb on - strand, within SMa0579 at 307.831 kb on + strand, within SMa0579 at 308.372 kb on + strand, within SMa0579 at 308.427 kb on - strand, within SMa0579 at 308.532 kb on - strand, within SMa0579 at 308.532 kb on - strand, within SMa0579 at 308.625 kb on - strand, within SMa0579 at 308.625 kb on - strand, within SMa0579 at 308.640 kb on - strand, within SMa0579 at 308.640 kb on - strand, within SMa0579 at 308.712 kb on - strand, within SMa0579 at 308.822 kb on - strand, within SMa0579 at 309.126 kb on + strand, within SMa0579 at 309.217 kb on - strand, within SMa0579 at 309.234 kb on + strand, within SMa0579 at 309.234 kb on + strand, within SMa0579 at 309.235 kb on - strand, within SMa0579 at 309.236 kb on + strand, within SMa0579 at 309.237 kb on - strand, within SMa0579 at 309.237 kb on - strand, within SMa0579 at 309.266 kb on + strand, within SMa0579 at 309.428 kb on + strand, within SMa0579 at 309.428 kb on + strand, within SMa0579 at 309.432 kb on + strand, within SMa0579 at 309.433 kb on - strand, within SMa0579 at 309.433 kb on - strand, within SMa0579 at 309.449 kb on - strand, within SMa0579 at 309.449 kb on - strand, within SMa0579 at 309.574 kb on + strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.608 kb on + strand, within SMa0579 at 309.608 kb on + strand, within SMa0579 at 309.608 kb on + strand, within SMa0579 at 309.660 kb on - strand, within SMa0579 at 309.660 kb on - strand, within SMa0579 at 309.735 kb on + strand, within SMa0579 at 309.735 kb on + strand, within SMa0579 at 309.736 kb on - strand, within SMa0579 at 309.805 kb on + strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.811 kb on - strand at 309.825 kb on + strand at 309.896 kb on - strand at 310.085 kb on + strand at 310.123 kb on + strand at 310.123 kb on + strand at 310.124 kb on - strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.354 kb on - strand at 310.358 kb on + strand at 310.495 kb on + strand at 310.495 kb on + strand at 310.496 kb on - strand at 310.652 kb on + strand, within SMa0581
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 306,533 + SMa0576 0.26 +0.7 306,533 + SMa0576 0.26 +0.1 306,569 + SMa0576 0.29 -0.0 306,569 + SMa0576 0.29 -0.1 306,570 - SMa0576 0.29 +0.5 306,696 - SMa0576 0.41 +3.0 306,819 - SMa0576 0.52 +0.3 306,827 + SMa0576 0.53 +1.3 306,884 - SMa0576 0.58 +2.7 306,909 - SMa0576 0.61 -0.6 306,928 + SMa0576 0.62 +0.0 306,928 + SMa0576 0.62 +0.8 306,929 - SMa0576 0.62 -0.1 307,009 + SMa0576 0.70 +1.1 307,142 + SMa0576 0.82 +1.2 307,143 - SMa0576 0.82 -0.3 307,209 + SMa0576 0.88 -0.1 307,297 - +0.6 307,300 + -0.3 307,301 + -0.3 307,302 - +1.6 307,302 - -0.7 307,302 - -1.0 307,338 - -0.1 307,354 + -0.1 307,442 - -0.8 307,610 - +0.1 307,620 + -0.9 307,620 + -1.3 307,621 - -1.3 307,621 - -0.9 307,621 - +1.2 307,658 - -0.9 307,658 - -0.4 307,819 + SMa0579 0.12 -0.3 307,819 + SMa0579 0.12 -1.2 307,819 + SMa0579 0.12 -0.9 307,819 + SMa0579 0.12 -1.0 307,819 + SMa0579 0.12 +0.7 307,819 + SMa0579 0.12 -1.0 307,820 - SMa0579 0.12 -0.3 307,820 - SMa0579 0.12 +0.4 307,820 - SMa0579 0.12 -0.4 307,831 + SMa0579 0.12 +1.0 308,372 + SMa0579 0.34 +0.0 308,427 - SMa0579 0.36 -0.5 308,532 - SMa0579 0.41 -1.6 308,532 - SMa0579 0.41 +0.1 308,625 - SMa0579 0.45 +0.0 308,625 - SMa0579 0.45 -0.1 308,640 - SMa0579 0.45 -0.1 308,640 - SMa0579 0.45 -0.5 308,712 - SMa0579 0.48 -0.4 308,822 - SMa0579 0.53 -0.9 309,126 + SMa0579 0.65 +1.4 309,217 - SMa0579 0.69 -0.3 309,234 + SMa0579 0.69 +0.7 309,234 + SMa0579 0.69 +0.4 309,235 - SMa0579 0.69 -0.9 309,236 + SMa0579 0.69 -0.9 309,237 - SMa0579 0.69 -0.2 309,237 - SMa0579 0.69 -0.9 309,266 + SMa0579 0.71 -0.1 309,428 + SMa0579 0.77 +0.7 309,428 + SMa0579 0.77 -0.7 309,432 + SMa0579 0.77 +0.6 309,433 - SMa0579 0.77 -1.0 309,433 - SMa0579 0.77 +1.7 309,449 - SMa0579 0.78 +0.3 309,449 - SMa0579 0.78 -0.2 309,574 + SMa0579 0.83 +0.0 309,575 - SMa0579 0.83 -0.1 309,575 - SMa0579 0.83 +0.1 309,575 - SMa0579 0.83 -0.0 309,575 - SMa0579 0.83 -1.3 309,608 + SMa0579 0.84 +0.6 309,608 + SMa0579 0.84 +0.1 309,608 + SMa0579 0.84 -1.1 309,660 - SMa0579 0.87 -0.9 309,660 - SMa0579 0.87 -0.1 309,735 + SMa0579 0.90 -0.1 309,735 + SMa0579 0.90 -0.4 309,736 - SMa0579 0.90 -0.1 309,805 + +0.4 309,806 - -0.8 309,806 - +0.7 309,811 - -1.2 309,825 + +0.4 309,896 - +0.6 310,085 + +0.2 310,123 + +2.7 310,123 + +0.7 310,124 - +0.1 310,353 + -0.3 310,353 + +0.1 310,353 + +0.6 310,354 - -1.2 310,358 + +0.5 310,495 + +0.2 310,495 + -0.1 310,496 - -0.3 310,652 + SMa0581 0.28 +0.4
Or see this region's nucleotide sequence