Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0064 and SMa0065 are separated by 62 nucleotides SMa0065 and SMa0067 are separated by 57 nucleotides SMa0067 and SMa0070 are separated by 185 nucleotides
SMa0064: SMa0064 - dehydratase/enolase, at 34,190 to 35,392
SMa0064
SMa0065: SMa0065 - GntR family transcriptional regulator, at 35,455 to 36,147
SMa0065
SMa0067: SMa0067 - ABC transporter substrate-binding protein, at 36,205 to 37,167
SMa0067
SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336
SMa0070
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 35.234 kb on + strand, within SMa0064 at 35.237 kb on + strand, within SMa0064 at 35.237 kb on + strand, within SMa0064 at 35.237 kb on + strand, within SMa0064 at 35.238 kb on - strand, within SMa0064 at 35.238 kb on - strand, within SMa0064 at 35.250 kb on - strand, within SMa0064 at 35.261 kb on - strand, within SMa0064 at 35.261 kb on - strand, within SMa0064 at 35.597 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 36.020 kb on + strand, within SMa0065 at 36.021 kb on - strand, within SMa0065 at 36.021 kb on - strand, within SMa0065 at 36.161 kb on + strand at 36.162 kb on - strand at 36.185 kb on - strand at 36.210 kb on - strand at 36.481 kb on + strand, within SMa0067 at 36.574 kb on - strand, within SMa0067 at 36.731 kb on + strand, within SMa0067 at 36.742 kb on + strand, within SMa0067 at 36.742 kb on + strand, within SMa0067 at 36.743 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.022 kb on - strand, within SMa0067 at 37.022 kb on - strand, within SMa0067 at 37.054 kb on + strand, within SMa0067 at 37.054 kb on + strand, within SMa0067 at 37.055 kb on - strand, within SMa0067 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 35,234 + SMa0064 0.87 +0.4 35,237 + SMa0064 0.87 -0.2 35,237 + SMa0064 0.87 -0.7 35,237 + SMa0064 0.87 -0.1 35,238 - SMa0064 0.87 -0.2 35,238 - SMa0064 0.87 -0.2 35,250 - SMa0064 0.88 -0.0 35,261 - SMa0064 0.89 -0.2 35,261 - SMa0064 0.89 -1.1 35,597 + SMa0065 0.20 +1.3 35,683 + SMa0065 0.33 +0.2 35,683 + SMa0065 0.33 -1.1 35,683 + SMa0065 0.33 +0.3 35,683 + SMa0065 0.33 -0.1 35,684 - SMa0065 0.33 -1.7 35,684 - SMa0065 0.33 -0.7 35,684 - SMa0065 0.33 -0.5 35,684 - SMa0065 0.33 -0.4 35,684 - SMa0065 0.33 -1.3 36,020 + SMa0065 0.82 -0.8 36,021 - SMa0065 0.82 -0.6 36,021 - SMa0065 0.82 -0.8 36,161 + -1.2 36,162 - +0.1 36,185 - -0.5 36,210 - -0.9 36,481 + SMa0067 0.29 -0.5 36,574 - SMa0067 0.38 -0.4 36,731 + SMa0067 0.55 -0.1 36,742 + SMa0067 0.56 -1.1 36,742 + SMa0067 0.56 -0.1 36,743 - SMa0067 0.56 -0.6 36,992 - SMa0067 0.82 -1.9 36,992 - SMa0067 0.82 -1.1 36,992 - SMa0067 0.82 -0.3 37,021 + SMa0067 0.85 -0.6 37,021 + SMa0067 0.85 -0.2 37,021 + SMa0067 0.85 -0.6 37,021 + SMa0067 0.85 -0.1 37,022 - SMa0067 0.85 -0.6 37,022 - SMa0067 0.85 -0.3 37,054 + SMa0067 0.88 +0.5 37,054 + SMa0067 0.88 +0.6 37,055 - SMa0067 0.88 +0.3 37,686 + SMa0070 0.34 +0.4 37,686 + SMa0070 0.34 -0.8 37,686 + SMa0070 0.34 +0.7 37,686 + SMa0070 0.34 -0.0 37,827 + SMa0070 0.48 -1.1 37,827 + SMa0070 0.48 -0.1 37,827 + SMa0070 0.48 -0.5 37,828 - SMa0070 0.48 -0.8 37,828 - SMa0070 0.48 -0.3 37,828 - SMa0070 0.48 -0.2
Or see this region's nucleotide sequence