Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21044 and SM_b21695 are separated by 721 nucleotides SM_b21695 and SM_b21698 are separated by 410 nucleotides
SM_b21044: SM_b21044 - ATP-dependent DNA ligase, at 663,822 to 665,732
_b21044
SM_b21695: SM_b21695 - hypothetical protein, at 666,454 to 666,726
_b21695
SM_b21698: SM_b21698 - hypothetical protein, at 667,137 to 667,616
_b21698
Position (kb) 666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 665.459 kb on + strand, within SM_b21044 at 665.460 kb on - strand, within SM_b21044 at 665.725 kb on - strand at 665.754 kb on + strand at 665.780 kb on + strand at 665.780 kb on + strand at 665.781 kb on - strand at 665.828 kb on - strand at 665.903 kb on + strand at 665.903 kb on + strand at 665.904 kb on - strand at 665.904 kb on - strand at 665.904 kb on - strand at 665.990 kb on + strand at 665.990 kb on + strand at 666.169 kb on + strand at 666.177 kb on + strand at 666.304 kb on + strand at 666.305 kb on - strand at 666.305 kb on - strand at 666.305 kb on - strand at 666.305 kb on - strand at 666.313 kb on - strand at 666.412 kb on + strand at 666.425 kb on - strand at 666.455 kb on + strand at 666.455 kb on + strand at 666.492 kb on + strand, within SM_b21695 at 666.564 kb on - strand, within SM_b21695 at 666.564 kb on - strand, within SM_b21695 at 666.602 kb on - strand, within SM_b21695 at 666.650 kb on + strand, within SM_b21695 at 666.650 kb on + strand, within SM_b21695 at 666.718 kb on - strand at 666.723 kb on - strand at 666.723 kb on - strand at 666.843 kb on + strand at 666.843 kb on + strand at 666.844 kb on - strand at 666.844 kb on - strand at 666.844 kb on - strand at 666.844 kb on - strand at 666.950 kb on + strand at 666.950 kb on + strand at 666.950 kb on + strand at 666.976 kb on + strand at 666.976 kb on + strand at 666.977 kb on - strand at 667.012 kb on + strand at 667.013 kb on - strand at 667.013 kb on - strand at 667.221 kb on - strand, within SM_b21698 at 667.267 kb on - strand, within SM_b21698 at 667.313 kb on + strand, within SM_b21698 at 667.314 kb on - strand, within SM_b21698 at 667.348 kb on + strand, within SM_b21698 at 667.348 kb on + strand, within SM_b21698 at 667.711 kb on + strand at 667.711 kb on + strand at 667.711 kb on + strand at 667.712 kb on - strand at 667.712 kb on - strand at 667.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 665,459 + SM_b21044 0.86 +0.0 665,460 - SM_b21044 0.86 +0.4 665,725 - -0.4 665,754 + +0.2 665,780 + -0.2 665,780 + +1.1 665,781 - +0.3 665,828 - +0.3 665,903 + -0.1 665,903 + -0.4 665,904 - -0.6 665,904 - -0.1 665,904 - -0.8 665,990 + +1.1 665,990 + +0.3 666,169 + +0.6 666,177 + +0.6 666,304 + +0.1 666,305 - +1.4 666,305 - +1.5 666,305 - -0.7 666,305 - -0.5 666,313 - +0.2 666,412 + +0.1 666,425 - +0.4 666,455 + +0.6 666,455 + +0.6 666,492 + SM_b21695 0.14 -0.5 666,564 - SM_b21695 0.40 -0.2 666,564 - SM_b21695 0.40 -1.3 666,602 - SM_b21695 0.54 -1.7 666,650 + SM_b21695 0.72 -0.6 666,650 + SM_b21695 0.72 +3.1 666,718 - -0.4 666,723 - +1.0 666,723 - +1.1 666,843 + -0.3 666,843 + -0.0 666,844 - -0.6 666,844 - +0.5 666,844 - -1.2 666,844 - +0.2 666,950 + -0.5 666,950 + -0.0 666,950 + +0.9 666,976 + +0.7 666,976 + +1.0 666,977 - -0.1 667,012 + +0.2 667,013 - +0.3 667,013 - +0.1 667,221 - SM_b21698 0.17 -0.7 667,267 - SM_b21698 0.27 -0.5 667,313 + SM_b21698 0.37 -2.4 667,314 - SM_b21698 0.37 -1.4 667,348 + SM_b21698 0.44 +0.3 667,348 + SM_b21698 0.44 +0.1 667,711 + -0.3 667,711 + -1.0 667,711 + -1.8 667,712 - +0.4 667,712 - +0.9 667,712 - -0.3
Or see this region's nucleotide sequence