Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21674

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20992 and SM_b21674 are separated by 32 nucleotidesSM_b21674 and SM_b20993 are separated by 287 nucleotides SM_b20992: SM_b20992 - hypothetical protein, at 1,226,845 to 1,228,248 _b20992 SM_b21674: SM_b21674 - hypothetical protein, at 1,228,281 to 1,228,526 _b21674 SM_b20993: SM_b20993 - FMNH2-dependent monooxygenase, at 1,228,814 to 1,230,025 _b20993 Position (kb) 1228 1229Strain fitness (log2 ratio) -2 -1 0 1at 1227.299 kb on + strand, within SM_b20992at 1227.299 kb on + strand, within SM_b20992at 1227.516 kb on + strand, within SM_b20992at 1227.666 kb on + strand, within SM_b20992at 1227.882 kb on - strand, within SM_b20992at 1228.097 kb on + strand, within SM_b20992at 1228.298 kb on + strandat 1228.298 kb on + strandat 1228.299 kb on - strandat 1228.349 kb on - strand, within SM_b21674at 1228.350 kb on + strand, within SM_b21674at 1228.450 kb on - strand, within SM_b21674at 1228.503 kb on - strandat 1228.525 kb on - strandat 1228.525 kb on - strandat 1228.552 kb on - strandat 1228.552 kb on - strandat 1228.552 kb on - strandat 1228.595 kb on + strandat 1228.595 kb on + strandat 1228.621 kb on + strandat 1228.663 kb on + strandat 1228.761 kb on + strandat 1228.762 kb on - strandat 1228.775 kb on + strandat 1228.775 kb on + strandat 1228.775 kb on + strandat 1228.776 kb on - strandat 1228.776 kb on - strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.779 kb on - strandat 1228.779 kb on - strandat 1229.037 kb on + strand, within SM_b20993at 1229.037 kb on + strand, within SM_b20993at 1229.120 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.304 kb on - strand, within SM_b20993at 1229.304 kb on - strand, within SM_b20993at 1229.308 kb on + strand, within SM_b20993at 1229.308 kb on + strand, within SM_b20993at 1229.308 kb on + strand, within SM_b20993at 1229.309 kb on - strand, within SM_b20993

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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1,227,299 + SM_b20992 0.32 -0.6
1,227,299 + SM_b20992 0.32 -0.9
1,227,516 + SM_b20992 0.48 +0.7
1,227,666 + SM_b20992 0.58 -0.1
1,227,882 - SM_b20992 0.74 -0.4
1,228,097 + SM_b20992 0.89 +0.1
1,228,298 + -0.8
1,228,298 + -0.7
1,228,299 - -0.4
1,228,349 - SM_b21674 0.28 -0.5
1,228,350 + SM_b21674 0.28 -0.3
1,228,450 - SM_b21674 0.69 -1.2
1,228,503 - +0.2
1,228,525 - +0.9
1,228,525 - +0.5
1,228,552 - -0.2
1,228,552 - -1.2
1,228,552 - +0.4
1,228,595 + -0.3
1,228,595 + -1.7
1,228,621 + +0.1
1,228,663 + +0.6
1,228,761 + -0.8
1,228,762 - +0.4
1,228,775 + +0.3
1,228,775 + -0.5
1,228,775 + -1.9
1,228,776 - -1.8
1,228,776 - +0.1
1,228,778 + +0.5
1,228,778 + -0.0
1,228,778 + +0.3
1,228,778 + -0.7
1,228,778 + +0.2
1,228,779 - +0.7
1,228,779 - -0.2
1,229,037 + SM_b20993 0.18 -0.0
1,229,037 + SM_b20993 0.18 -0.3
1,229,120 + SM_b20993 0.25 -0.4
1,229,303 + SM_b20993 0.40 -0.7
1,229,303 + SM_b20993 0.40 +0.5
1,229,303 + SM_b20993 0.40 -0.2
1,229,303 + SM_b20993 0.40 +0.7
1,229,303 + SM_b20993 0.40 -0.9
1,229,304 - SM_b20993 0.40 +0.3
1,229,304 - SM_b20993 0.40 +0.6
1,229,308 + SM_b20993 0.41 +0.5
1,229,308 + SM_b20993 0.41 -1.3
1,229,308 + SM_b20993 0.41 -0.9
1,229,309 - SM_b20993 0.41 -0.4

Or see this region's nucleotide sequence