Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21367 and SM_b21368 overlap by 4 nucleotides SM_b21368 and SM_b21369 are separated by 3 nucleotides
SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584
_b21367
SM_b21368: SM_b21368 - cytochrome c oxidase subunit II, at 1,031,581 to 1,032,564
_b21368
SM_b21369: SM_b21369 - hypothetical protein, at 1,032,568 to 1,033,641
_b21369
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-2
-1
0
1 at 1030.597 kb on + strand, within SM_b21367 at 1030.726 kb on - strand, within SM_b21367 at 1030.726 kb on - strand, within SM_b21367 at 1030.755 kb on + strand, within SM_b21367 at 1030.756 kb on - strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.889 kb on - strand, within SM_b21367 at 1030.889 kb on - strand, within SM_b21367 at 1030.996 kb on + strand, within SM_b21367 at 1031.114 kb on + strand, within SM_b21367 at 1031.114 kb on + strand, within SM_b21367 at 1031.115 kb on - strand, within SM_b21367 at 1031.115 kb on - strand, within SM_b21367 at 1031.138 kb on + strand, within SM_b21367 at 1031.138 kb on + strand, within SM_b21367 at 1031.139 kb on - strand, within SM_b21367 at 1031.225 kb on + strand, within SM_b21367 at 1031.225 kb on + strand, within SM_b21367 at 1031.226 kb on - strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.410 kb on - strand, within SM_b21367 at 1031.410 kb on - strand, within SM_b21367 at 1031.421 kb on + strand, within SM_b21367 at 1031.422 kb on - strand, within SM_b21367 at 1031.460 kb on - strand, within SM_b21367 at 1031.864 kb on - strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.877 kb on + strand, within SM_b21368 at 1031.877 kb on + strand, within SM_b21368 at 1031.878 kb on - strand, within SM_b21368 at 1031.878 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1032.057 kb on + strand, within SM_b21368 at 1032.057 kb on + strand, within SM_b21368 at 1032.058 kb on - strand, within SM_b21368 at 1032.175 kb on + strand, within SM_b21368 at 1032.208 kb on + strand, within SM_b21368 at 1032.366 kb on + strand, within SM_b21368 at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.568 kb on - strand at 1032.568 kb on - strand at 1032.568 kb on - strand at 1032.665 kb on - strand at 1033.146 kb on - strand, within SM_b21369 at 1033.210 kb on + strand at 1033.211 kb on - strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.389 kb on - strand, within SM_b21369 at 1033.389 kb on - strand, within SM_b21369 at 1033.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 1,030,597 + SM_b21367 0.12 -0.3 1,030,726 - SM_b21367 0.24 -1.4 1,030,726 - SM_b21367 0.24 -0.1 1,030,755 + SM_b21367 0.26 +0.3 1,030,756 - SM_b21367 0.26 +0.0 1,030,862 + SM_b21367 0.36 -0.3 1,030,862 + SM_b21367 0.36 -0.7 1,030,862 + SM_b21367 0.36 -0.2 1,030,862 + SM_b21367 0.36 -0.5 1,030,889 - SM_b21367 0.38 -0.0 1,030,889 - SM_b21367 0.38 -1.4 1,030,996 + SM_b21367 0.48 +0.2 1,031,114 + SM_b21367 0.58 +0.0 1,031,114 + SM_b21367 0.58 -0.8 1,031,115 - SM_b21367 0.58 -0.1 1,031,115 - SM_b21367 0.58 +0.5 1,031,138 + SM_b21367 0.60 -0.0 1,031,138 + SM_b21367 0.60 -0.1 1,031,139 - SM_b21367 0.60 +0.5 1,031,225 + SM_b21367 0.68 +0.6 1,031,225 + SM_b21367 0.68 +0.4 1,031,226 - SM_b21367 0.68 -0.0 1,031,409 + SM_b21367 0.84 -0.7 1,031,409 + SM_b21367 0.84 -0.2 1,031,409 + SM_b21367 0.84 -0.6 1,031,409 + SM_b21367 0.84 -0.3 1,031,409 + SM_b21367 0.84 -0.3 1,031,409 + SM_b21367 0.84 +0.4 1,031,410 - SM_b21367 0.84 -0.1 1,031,410 - SM_b21367 0.84 +0.5 1,031,421 + SM_b21367 0.85 -0.8 1,031,422 - SM_b21367 0.86 +0.1 1,031,460 - SM_b21367 0.89 -1.0 1,031,864 - SM_b21368 0.29 -0.9 1,031,872 + SM_b21368 0.30 -0.1 1,031,872 + SM_b21368 0.30 -0.9 1,031,872 + SM_b21368 0.30 -1.4 1,031,872 + SM_b21368 0.30 -0.7 1,031,873 - SM_b21368 0.30 -0.1 1,031,873 - SM_b21368 0.30 -0.3 1,031,873 - SM_b21368 0.30 +0.1 1,031,873 - SM_b21368 0.30 -2.5 1,031,873 - SM_b21368 0.30 -2.6 1,031,873 - SM_b21368 0.30 -0.3 1,031,873 - SM_b21368 0.30 -0.1 1,031,873 - SM_b21368 0.30 -1.6 1,031,877 + SM_b21368 0.30 -1.0 1,031,877 + SM_b21368 0.30 +0.6 1,031,878 - SM_b21368 0.30 +1.4 1,031,878 - SM_b21368 0.30 -0.0 1,031,963 - SM_b21368 0.39 -1.1 1,031,963 - SM_b21368 0.39 +0.2 1,031,963 - SM_b21368 0.39 +1.1 1,032,057 + SM_b21368 0.48 -0.2 1,032,057 + SM_b21368 0.48 +0.1 1,032,058 - SM_b21368 0.48 -0.0 1,032,175 + SM_b21368 0.60 -1.1 1,032,208 + SM_b21368 0.64 +0.4 1,032,366 + SM_b21368 0.80 -0.6 1,032,567 + -0.1 1,032,567 + +0.2 1,032,567 + -0.3 1,032,567 + +0.1 1,032,568 - +0.1 1,032,568 - -0.1 1,032,568 - -0.1 1,032,665 - -0.5 1,033,146 - SM_b21369 0.54 -0.2 1,033,210 + +1.4 1,033,211 - SM_b21369 0.60 -1.5 1,033,348 + SM_b21369 0.73 +0.0 1,033,348 + SM_b21369 0.73 -0.5 1,033,348 + SM_b21369 0.73 -0.8 1,033,348 + SM_b21369 0.73 -0.3 1,033,349 - SM_b21369 0.73 -0.6 1,033,349 - SM_b21369 0.73 +0.1 1,033,349 - SM_b21369 0.73 -1.0 1,033,349 - SM_b21369 0.73 +0.4 1,033,349 - SM_b21369 0.73 -0.7 1,033,350 + SM_b21369 0.73 -0.4 1,033,350 + SM_b21369 0.73 +0.1 1,033,350 + SM_b21369 0.73 -1.6 1,033,350 + SM_b21369 0.73 -0.8 1,033,350 + SM_b21369 0.73 -0.4 1,033,351 - SM_b21369 0.73 -0.6 1,033,351 - SM_b21369 0.73 -0.4 1,033,351 - SM_b21369 0.73 +0.7 1,033,389 - SM_b21369 0.76 +0.4 1,033,389 - SM_b21369 0.76 +0.0 1,033,555 + +0.6
Or see this region's nucleotide sequence