Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20518 and SM_b20519 are separated by 432 nucleotides
SM_b20518: SM_b20518 - hypothetical protein, at 542,829 to 543,548
_b20518
SM_b20519: SM_b20519 - hypothetical protein, at 543,981 to 544,349
_b20519
Position (kb) 543
544
545 Strain fitness (log2 ratio) -1
0
1 at 543.049 kb on - strand, within SM_b20518 at 543.100 kb on - strand, within SM_b20518 at 543.100 kb on - strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.105 kb on + strand, within SM_b20518 at 543.147 kb on + strand, within SM_b20518 at 543.147 kb on + strand, within SM_b20518 at 543.148 kb on - strand at 543.148 kb on - strand, within SM_b20518 at 543.148 kb on - strand, within SM_b20518 at 543.148 kb on - strand, within SM_b20518 at 543.458 kb on - strand, within SM_b20518 at 543.486 kb on - strand at 543.486 kb on - strand at 543.486 kb on - strand at 544.178 kb on - strand, within SM_b20519 at 544.267 kb on + strand, within SM_b20519 at 544.330 kb on + strand at 544.371 kb on + strand at 544.379 kb on + strand at 544.380 kb on - strand at 544.408 kb on + strand at 544.409 kb on - strand at 544.554 kb on + strand at 544.555 kb on - strand at 544.604 kb on + strand at 544.604 kb on + strand at 544.658 kb on + strand at 544.658 kb on + strand at 544.659 kb on - strand at 544.659 kb on - strand at 544.665 kb on + strand at 544.680 kb on + strand at 544.680 kb on + strand at 544.712 kb on - strand at 544.712 kb on - strand at 544.743 kb on + strand at 544.743 kb on + strand at 544.743 kb on + strand at 544.744 kb on - strand at 544.799 kb on + strand at 544.800 kb on - strand at 544.869 kb on + strand at 544.920 kb on + strand at 544.921 kb on - strand at 544.925 kb on + strand at 544.983 kb on + strand at 544.983 kb on + strand at 544.983 kb on + strand at 544.983 kb on + strand at 544.984 kb on - strand at 544.984 kb on - strand at 544.984 kb on - strand at 544.988 kb on - strand at 544.988 kb on - strand at 545.046 kb on + strand at 545.046 kb on + strand at 545.046 kb on + strand at 545.047 kb on - strand at 545.047 kb on - strand at 545.047 kb on - strand at 545.047 kb on - strand at 545.123 kb on + strand at 545.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 543,049 - SM_b20518 0.31 -0.1 543,100 - SM_b20518 0.38 +0.2 543,100 - SM_b20518 0.38 +0.4 543,103 + SM_b20518 0.38 +0.8 543,103 + SM_b20518 0.38 -0.5 543,103 + SM_b20518 0.38 +0.5 543,103 + SM_b20518 0.38 -0.1 543,103 + SM_b20518 0.38 +0.1 543,103 + SM_b20518 0.38 -0.3 543,104 - SM_b20518 0.38 +0.4 543,104 - SM_b20518 0.38 +1.5 543,104 - SM_b20518 0.38 +0.1 543,105 + SM_b20518 0.38 +0.1 543,147 + SM_b20518 0.44 -0.3 543,147 + SM_b20518 0.44 -0.3 543,148 - -0.5 543,148 - SM_b20518 0.44 +0.7 543,148 - SM_b20518 0.44 +0.5 543,148 - SM_b20518 0.44 +0.3 543,458 - SM_b20518 0.87 -0.0 543,486 - -0.4 543,486 - -1.3 543,486 - +0.2 544,178 - SM_b20519 0.53 +0.5 544,267 + SM_b20519 0.78 +0.6 544,330 + +0.1 544,371 + +0.4 544,379 + -0.5 544,380 - -0.8 544,408 + +0.2 544,409 - +0.1 544,554 + -0.1 544,555 - -0.4 544,604 + -0.0 544,604 + -0.3 544,658 + -1.1 544,658 + +0.1 544,659 - -0.7 544,659 - +0.5 544,665 + -1.0 544,680 + +1.3 544,680 + -1.4 544,712 - +0.1 544,712 - -1.0 544,743 + -0.2 544,743 + -0.3 544,743 + -0.4 544,744 - +0.3 544,799 + -0.8 544,800 - -0.0 544,869 + -0.1 544,920 + -0.0 544,921 - -0.9 544,925 + -0.4 544,983 + -0.1 544,983 + -0.4 544,983 + +0.0 544,983 + -0.0 544,984 - -0.3 544,984 - +0.1 544,984 - +0.1 544,988 - +0.3 544,988 - -0.8 545,046 + +0.3 545,046 + -0.4 545,046 + +0.7 545,047 - +0.2 545,047 - -0.1 545,047 - +0.1 545,047 - +0.6 545,123 + +1.0 545,123 + -1.0
Or see this region's nucleotide sequence