Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02393 and SMc02409 are separated by 286 nucleotides SMc02409 and SMc02394 are separated by 293 nucleotides SMc02394 and SMc02461 are separated by 13 nucleotides SMc02461 and SMc02396 are separated by 680 nucleotides
SMc02393: SMc02393 - histidinol-phosphate aminotransferase, at 1,145,519 to 1,146,640
SMc02393
SMc02409: SMc02409 - tRNA-Ser, at 1,146,927 to 1,147,016
SMc02409
SMc02394: SMc02394 - hypothetical protein, at 1,147,310 to 1,147,618
SMc02394
SMc02461: SMc02461 - hypothetical protein, at 1,147,632 to 1,147,928
SMc02461
SMc02396: SMc02396 - outer membrane protein, at 1,148,609 to 1,149,646
SMc02396
Position (kb)
1147
1148 Strain fitness (log2 ratio)
-1
0
1 at 1146.653 kb on + strand at 1146.653 kb on + strand at 1146.688 kb on + strand at 1146.808 kb on + strand at 1146.809 kb on - strand at 1146.809 kb on - strand at 1146.817 kb on + strand at 1147.021 kb on - strand at 1147.056 kb on + strand at 1147.057 kb on - strand at 1147.140 kb on + strand at 1147.141 kb on - strand at 1147.141 kb on - strand at 1147.141 kb on - strand at 1147.141 kb on - strand at 1147.143 kb on - strand at 1147.269 kb on + strand at 1147.269 kb on + strand at 1147.269 kb on + strand at 1147.269 kb on + strand at 1147.270 kb on - strand at 1147.367 kb on - strand, within SMc02394 at 1147.640 kb on - strand at 1147.640 kb on - strand at 1147.657 kb on + strand at 1147.658 kb on - strand at 1147.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,146,653 + -0.4 1,146,653 + -0.4 1,146,688 + +0.3 1,146,808 + -0.8 1,146,809 - -0.4 1,146,809 - -0.5 1,146,817 + +0.2 1,147,021 - -0.3 1,147,056 + +0.2 1,147,057 - -1.2 1,147,140 + +0.6 1,147,141 - -0.3 1,147,141 - -0.1 1,147,141 - -0.8 1,147,141 - -0.0 1,147,143 - +0.3 1,147,269 + -1.0 1,147,269 + -0.2 1,147,269 + -0.7 1,147,269 + +0.2 1,147,270 - +0.6 1,147,367 - SMc02394 0.18 +0.8 1,147,640 - +0.5 1,147,640 - -0.3 1,147,657 + +0.1 1,147,658 - +0.4 1,147,921 - +1.1
Or see this region's nucleotide sequence