Strain Fitness in Sinorhizobium meliloti 1021 around SMc01376

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01935 and SMc01376 are separated by 17 nucleotidesSMc01376 and SMc01375 are separated by 468 nucleotides SMc01935: SMc01935 - hypothetical protein, at 1,400,248 to 1,401,474 SMc01935 SMc01376: SMc01376 - ABC transporter ATP-binding protein, at 1,401,492 to 1,402,178 SMc01376 SMc01375: SMc01375 - DNA polymerase III subunit alpha, at 1,402,647 to 1,406,156 SMc01375 Position (kb) 1401 1402 1403Strain fitness (log2 ratio) -1 0 1at 1401.472 kb on + strandat 1401.472 kb on + strandat 1402.177 kb on - strandat 1402.312 kb on + strandat 1402.312 kb on + strandat 1402.410 kb on + strandat 1402.410 kb on + strandat 1402.411 kb on - strandat 1402.541 kb on + strandat 1402.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,401,472 + +1.6
1,401,472 + +0.6
1,402,177 - -0.0
1,402,312 + -0.5
1,402,312 + -0.9
1,402,410 + +0.5
1,402,410 + -0.2
1,402,411 - +0.2
1,402,541 + +0.0
1,402,542 - -1.2

Or see this region's nucleotide sequence