Strain Fitness in Sinorhizobium meliloti 1021 around SMa1535

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1532 and SMa1533 overlap by 13 nucleotidesSMa1533 and SMa1535 are separated by 215 nucleotidesSMa1535 and SMa1536 overlap by 4 nucleotides SMa1532: SMa1532 - NADH dehydrogenase subunit B, at 844,850 to 845,353 SMa1532 SMa1533: SMa1533 - NuoA2 NADH I chain A, at 845,341 to 845,706 SMa1533 SMa1535: SMa1535 - NuoN2 NADH I chain N, at 845,922 to 847,361 SMa1535 SMa1536: SMa1536 - NuoM2 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase, at 847,358 to 848,833 SMa1536 Position (kb) 845 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2at 845.016 kb on + strand, within SMa1532at 845.016 kb on + strand, within SMa1532at 845.016 kb on + strand, within SMa1532at 845.017 kb on - strand, within SMa1532at 845.017 kb on - strand, within SMa1532at 845.017 kb on - strand, within SMa1532at 845.025 kb on + strand, within SMa1532at 845.025 kb on + strand, within SMa1532at 845.026 kb on - strand, within SMa1532at 845.202 kb on + strand, within SMa1532at 845.318 kb on + strandat 845.318 kb on + strandat 845.318 kb on + strandat 845.319 kb on - strandat 845.379 kb on - strand, within SMa1533at 845.396 kb on - strand, within SMa1533at 845.396 kb on - strand, within SMa1533at 845.509 kb on - strand, within SMa1533at 845.517 kb on + strand, within SMa1533at 845.568 kb on + strand, within SMa1533at 845.580 kb on - strand, within SMa1533at 845.672 kb on + strandat 845.674 kb on - strandat 845.706 kb on + strandat 845.822 kb on + strandat 845.823 kb on - strandat 845.858 kb on + strandat 845.858 kb on + strandat 845.859 kb on - strandat 845.861 kb on + strandat 845.862 kb on - strandat 845.902 kb on + strandat 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.071 kb on - strand, within SMa1535at 846.094 kb on + strand, within SMa1535at 846.095 kb on - strand, within SMa1535at 846.095 kb on - strand, within SMa1535at 846.178 kb on + strand, within SMa1535at 846.233 kb on - strand, within SMa1535at 846.233 kb on - strand, within SMa1535at 846.364 kb on + strand, within SMa1535at 846.364 kb on + strand, within SMa1535at 846.365 kb on - strand, within SMa1535at 846.365 kb on - strand, within SMa1535at 846.376 kb on + strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.384 kb on + strand, within SMa1535at 846.384 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.662 kb on - strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.681 kb on - strand, within SMa1535at 846.804 kb on - strand, within SMa1535at 846.874 kb on + strand, within SMa1535at 846.874 kb on + strand, within SMa1535at 846.874 kb on + strand, within SMa1535at 846.875 kb on - strand, within SMa1535at 846.931 kb on + strand, within SMa1535at 846.931 kb on + strand, within SMa1535at 846.931 kb on + strand, within SMa1535at 846.932 kb on - strand, within SMa1535at 846.932 kb on - strand, within SMa1535at 846.932 kb on - strand, within SMa1535at 846.965 kb on - strand, within SMa1535at 846.965 kb on - strand, within SMa1535at 846.965 kb on - strand, within SMa1535at 847.033 kb on + strand, within SMa1535at 847.033 kb on + strandat 847.033 kb on + strand, within SMa1535at 847.034 kb on - strand, within SMa1535at 847.036 kb on + strand, within SMa1535at 847.037 kb on - strand, within SMa1535at 847.060 kb on - strand, within SMa1535at 847.108 kb on + strand, within SMa1535at 847.108 kb on + strand, within SMa1535at 847.225 kb on - strandat 847.511 kb on + strand, within SMa1536at 847.511 kb on + strand, within SMa1536at 847.511 kb on + strand, within SMa1536at 847.512 kb on - strand, within SMa1536at 847.518 kb on + strand, within SMa1536at 847.560 kb on + strand, within SMa1536at 847.560 kb on + strand, within SMa1536at 847.575 kb on + strand, within SMa1536at 847.576 kb on - strand, within SMa1536at 847.729 kb on - strand, within SMa1536at 847.729 kb on - strand, within SMa1536at 847.729 kb on - strand, within SMa1536at 847.791 kb on + strand, within SMa1536at 847.930 kb on - strand, within SMa1536at 847.930 kb on - strand, within SMa1536at 848.022 kb on + strand, within SMa1536at 848.025 kb on + strand, within SMa1536at 848.025 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.359 kb on - strand, within SMa1536at 848.359 kb on - strand, within SMa1536

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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845,016 + SMa1532 0.33 -0.7
845,016 + SMa1532 0.33 +0.0
845,016 + SMa1532 0.33 -0.1
845,017 - SMa1532 0.33 +0.9
845,017 - SMa1532 0.33 -0.3
845,017 - SMa1532 0.33 -1.3
845,025 + SMa1532 0.35 +1.3
845,025 + SMa1532 0.35 -0.5
845,026 - SMa1532 0.35 +0.5
845,202 + SMa1532 0.70 -0.3
845,318 + -0.4
845,318 + -0.8
845,318 + -0.4
845,319 - +0.4
845,379 - SMa1533 0.10 -0.2
845,396 - SMa1533 0.15 -1.0
845,396 - SMa1533 0.15 +0.0
845,509 - SMa1533 0.46 +0.3
845,517 + SMa1533 0.48 -0.5
845,568 + SMa1533 0.62 -2.3
845,580 - SMa1533 0.65 +1.0
845,672 + +0.2
845,674 - +0.3
845,706 + -0.2
845,822 + -0.0
845,823 - +0.7
845,858 + -0.3
845,858 + +0.0
845,859 - +2.1
845,861 + +0.6
845,862 - +0.1
845,902 + -2.6
846,070 + SMa1535 0.10 +0.1
846,070 + SMa1535 0.10 -0.2
846,070 + SMa1535 0.10 -0.6
846,070 + SMa1535 0.10 -0.2
846,070 + SMa1535 0.10 +1.9
846,071 - SMa1535 0.10 +0.3
846,094 + SMa1535 0.12 -0.4
846,095 - SMa1535 0.12 +0.2
846,095 - SMa1535 0.12 -0.1
846,178 + SMa1535 0.18 +0.2
846,233 - SMa1535 0.22 +0.6
846,233 - SMa1535 0.22 -0.7
846,364 + SMa1535 0.31 +0.8
846,364 + SMa1535 0.31 +0.8
846,365 - SMa1535 0.31 +2.4
846,365 - SMa1535 0.31 +0.4
846,376 + SMa1535 0.32 +0.2
846,377 - SMa1535 0.32 +0.3
846,377 - SMa1535 0.32 -1.1
846,377 - SMa1535 0.32 -0.3
846,384 + SMa1535 0.32 +0.1
846,384 + SMa1535 0.32 +0.4
846,661 + SMa1535 0.51 +1.4
846,661 + SMa1535 0.51 +0.5
846,661 + SMa1535 0.51 -0.1
846,661 + SMa1535 0.51 +0.0
846,662 - SMa1535 0.51 -2.0
846,680 + SMa1535 0.53 -0.4
846,680 + SMa1535 0.53 +0.2
846,680 + SMa1535 0.53 -0.2
846,680 + SMa1535 0.53 -1.0
846,680 + SMa1535 0.53 +0.6
846,681 - SMa1535 0.53 +0.2
846,804 - SMa1535 0.61 +0.9
846,874 + SMa1535 0.66 +1.8
846,874 + SMa1535 0.66 +1.5
846,874 + SMa1535 0.66 -0.3
846,875 - SMa1535 0.66 -0.5
846,931 + SMa1535 0.70 -0.4
846,931 + SMa1535 0.70 +0.8
846,931 + SMa1535 0.70 -1.3
846,932 - SMa1535 0.70 +0.2
846,932 - SMa1535 0.70 +0.8
846,932 - SMa1535 0.70 +0.3
846,965 - SMa1535 0.72 +0.2
846,965 - SMa1535 0.72 -0.0
846,965 - SMa1535 0.72 -0.2
847,033 + SMa1535 0.77 +0.0
847,033 + +1.1
847,033 + SMa1535 0.77 +0.8
847,034 - SMa1535 0.77 -0.6
847,036 + SMa1535 0.77 -0.3
847,037 - SMa1535 0.77 +0.1
847,060 - SMa1535 0.79 -1.1
847,108 + SMa1535 0.82 +0.0
847,108 + SMa1535 0.82 +0.4
847,225 - -0.0
847,511 + SMa1536 0.10 -0.1
847,511 + SMa1536 0.10 +0.0
847,511 + SMa1536 0.10 +0.4
847,512 - SMa1536 0.10 +0.1
847,518 + SMa1536 0.11 -1.0
847,560 + SMa1536 0.14 +0.4
847,560 + SMa1536 0.14 +0.4
847,575 + SMa1536 0.15 +1.6
847,576 - SMa1536 0.15 -0.8
847,729 - SMa1536 0.25 -0.3
847,729 - SMa1536 0.25 -0.1
847,729 - SMa1536 0.25 +0.1
847,791 + SMa1536 0.29 -0.0
847,930 - SMa1536 0.39 +0.8
847,930 - SMa1536 0.39 +0.7
848,022 + SMa1536 0.45 -0.3
848,025 + SMa1536 0.45 -0.3
848,025 + SMa1536 0.45 +0.3
848,358 + SMa1536 0.68 +0.2
848,358 + SMa1536 0.68 +0.6
848,358 + SMa1536 0.68 -0.0
848,359 - SMa1536 0.68 -0.2
848,359 - SMa1536 0.68 +0.4

Or see this region's nucleotide sequence