Strain Fitness in Sinorhizobium meliloti 1021 around SMa0392

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0391 and SMa0392 are separated by 33 nucleotidesSMa0392 and SMa0394 are separated by 64 nucleotides SMa0391: SMa0391 - ABC transporter ATP-binding protein, at 211,336 to 212,469 SMa0391 SMa0392: SMa0392 - ABC transporter substrate-binding protein, at 212,503 to 213,618 SMa0392 SMa0394: SMa0394 - ABC transporter permease, at 213,683 to 214,627 SMa0394 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2 3at 211.614 kb on + strand, within SMa0391at 211.615 kb on - strand, within SMa0391at 211.729 kb on + strand, within SMa0391at 211.729 kb on + strand, within SMa0391at 212.045 kb on - strand, within SMa0391at 212.121 kb on + strand, within SMa0391at 212.156 kb on + strand, within SMa0391at 212.157 kb on - strand, within SMa0391at 212.234 kb on + strand, within SMa0391at 212.329 kb on + strand, within SMa0391at 212.449 kb on - strandat 212.501 kb on + strandat 212.502 kb on - strandat 212.709 kb on + strand, within SMa0392at 212.709 kb on + strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.956 kb on + strand, within SMa0392at 212.956 kb on + strand, within SMa0392at 212.962 kb on + strand, within SMa0392at 212.962 kb on + strand, within SMa0392at 212.968 kb on + strand, within SMa0392at 212.968 kb on + strand, within SMa0392at 212.969 kb on - strand, within SMa0392at 213.064 kb on + strand, within SMa0392at 213.064 kb on + strandat 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.211 kb on - strand, within SMa0392at 213.211 kb on - strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.380 kb on - strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.396 kb on + strand, within SMa0392at 213.396 kb on + strand, within SMa0392at 213.547 kb on - strandat 213.560 kb on + strandat 213.561 kb on - strandat 213.624 kb on + strandat 213.704 kb on + strandat 213.705 kb on - strandat 213.884 kb on - strand, within SMa0394at 213.884 kb on - strand, within SMa0394at 213.884 kb on - strand, within SMa0394at 213.905 kb on + strand, within SMa0394at 213.905 kb on + strand, within SMa0394at 213.905 kb on + strand, within SMa0394at 213.920 kb on + strand, within SMa0394at 214.022 kb on + strand, within SMa0394at 214.022 kb on + strand, within SMa0394at 214.023 kb on - strand, within SMa0394at 214.029 kb on - strand, within SMa0394at 214.029 kb on - strand, within SMa0394at 214.042 kb on + strand, within SMa0394at 214.205 kb on + strand, within SMa0394at 214.206 kb on - strand, within SMa0394at 214.206 kb on - strand, within SMa0394at 214.206 kb on - strand, within SMa0394at 214.221 kb on + strand, within SMa0394at 214.241 kb on + strand, within SMa0394at 214.242 kb on - strand, within SMa0394at 214.404 kb on + strand, within SMa0394at 214.405 kb on - strand, within SMa0394at 214.485 kb on - strand, within SMa0394at 214.485 kb on - strand, within SMa0394at 214.485 kb on - strand, within SMa0394at 214.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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211,614 + SMa0391 0.25 -0.7
211,615 - SMa0391 0.25 -0.4
211,729 + SMa0391 0.35 -0.8
211,729 + SMa0391 0.35 +0.8
212,045 - SMa0391 0.63 -0.1
212,121 + SMa0391 0.69 +0.3
212,156 + SMa0391 0.72 -0.3
212,157 - SMa0391 0.72 -0.2
212,234 + SMa0391 0.79 -0.2
212,329 + SMa0391 0.88 -0.8
212,449 - +0.3
212,501 + +0.5
212,502 - +2.2
212,709 + SMa0392 0.18 +0.9
212,709 + SMa0392 0.18 -1.1
212,710 - SMa0392 0.19 +1.9
212,710 - SMa0392 0.19 -1.7
212,710 - SMa0392 0.19 -0.2
212,710 - SMa0392 0.19 -0.4
212,710 - SMa0392 0.19 +0.5
212,956 + SMa0392 0.41 -0.4
212,956 + SMa0392 0.41 -0.8
212,962 + SMa0392 0.41 +0.0
212,962 + SMa0392 0.41 +0.6
212,968 + SMa0392 0.42 +0.8
212,968 + SMa0392 0.42 +1.5
212,969 - SMa0392 0.42 +0.3
213,064 + SMa0392 0.50 +0.5
213,064 + +1.9
213,065 - SMa0392 0.50 +0.0
213,065 - SMa0392 0.50 -0.7
213,065 - SMa0392 0.50 -0.3
213,065 - SMa0392 0.50 -0.1
213,065 - SMa0392 0.50 +1.0
213,065 - SMa0392 0.50 -0.1
213,211 - SMa0392 0.63 +1.2
213,211 - SMa0392 0.63 -0.4
213,379 + SMa0392 0.78 +0.5
213,379 + SMa0392 0.78 -0.2
213,379 + SMa0392 0.78 -0.4
213,380 - SMa0392 0.79 +1.2
213,394 + SMa0392 0.80 +0.3
213,394 + SMa0392 0.80 -0.0
213,394 + SMa0392 0.80 +0.2
213,394 + SMa0392 0.80 +0.1
213,395 - SMa0392 0.80 +0.9
213,395 - SMa0392 0.80 -0.5
213,395 - SMa0392 0.80 -0.1
213,395 - SMa0392 0.80 +0.4
213,396 + SMa0392 0.80 +0.3
213,396 + SMa0392 0.80 -0.1
213,547 - +0.2
213,560 + +0.8
213,561 - -0.7
213,624 + -0.7
213,704 + -0.3
213,705 - +0.3
213,884 - SMa0394 0.21 +0.4
213,884 - SMa0394 0.21 +0.9
213,884 - SMa0394 0.21 -0.5
213,905 + SMa0394 0.23 -0.5
213,905 + SMa0394 0.23 -0.3
213,905 + SMa0394 0.23 +1.6
213,920 + SMa0394 0.25 -1.4
214,022 + SMa0394 0.36 -0.1
214,022 + SMa0394 0.36 +0.1
214,023 - SMa0394 0.36 -0.0
214,029 - SMa0394 0.37 -0.3
214,029 - SMa0394 0.37 +0.5
214,042 + SMa0394 0.38 -0.4
214,205 + SMa0394 0.55 +0.2
214,206 - SMa0394 0.55 -0.1
214,206 - SMa0394 0.55 -0.7
214,206 - SMa0394 0.55 +0.7
214,221 + SMa0394 0.57 +1.2
214,241 + SMa0394 0.59 -0.4
214,242 - SMa0394 0.59 -0.0
214,404 + SMa0394 0.76 -0.4
214,405 - SMa0394 0.76 -0.3
214,485 - SMa0394 0.85 -1.3
214,485 - SMa0394 0.85 -0.1
214,485 - SMa0394 0.85 -1.9
214,598 - +2.9

Or see this region's nucleotide sequence