Strain Fitness in Sinorhizobium meliloti 1021 around SMc01584

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01583 and SMc01584 are separated by 188 nucleotidesSMc01584 and SMc01585 are separated by 669 nucleotides SMc01583: SMc01583 - hypothetical protein, at 2,518,041 to 2,519,231 SMc01583 SMc01584: SMc01584 - hypothetical protein, at 2,519,420 to 2,520,322 SMc01584 SMc01585: SMc01585 - cold shock transcription regulator protein, at 2,520,992 to 2,521,207 SMc01585 Position (kb) 2519 2520 2521Strain fitness (log2 ratio) -2 -1 0 1at 2518.860 kb on + strand, within SMc01583at 2518.894 kb on - strand, within SMc01583at 2518.894 kb on - strand, within SMc01583at 2518.894 kb on - strand, within SMc01583at 2518.993 kb on - strand, within SMc01583at 2519.050 kb on - strand, within SMc01583at 2519.363 kb on + strandat 2519.599 kb on + strand, within SMc01584at 2519.728 kb on + strand, within SMc01584at 2519.729 kb on + strand, within SMc01584at 2519.729 kb on + strand, within SMc01584at 2519.729 kb on + strand, within SMc01584at 2519.729 kb on + strand, within SMc01584at 2519.730 kb on - strand, within SMc01584at 2519.730 kb on - strand, within SMc01584at 2519.737 kb on - strand, within SMc01584at 2519.737 kb on - strand, within SMc01584at 2520.112 kb on - strand, within SMc01584at 2520.124 kb on + strand, within SMc01584at 2520.125 kb on - strand, within SMc01584at 2520.379 kb on + strandat 2520.383 kb on - strandat 2520.388 kb on + strandat 2520.389 kb on - strandat 2520.389 kb on - strandat 2520.389 kb on - strandat 2520.449 kb on - strandat 2520.451 kb on - strandat 2520.451 kb on - strandat 2520.468 kb on + strandat 2520.718 kb on - strandat 2521.288 kb on - strandat 2521.289 kb on + strandat 2521.289 kb on + strandat 2521.289 kb on + strandat 2521.290 kb on - strandat 2521.292 kb on - strandat 2521.292 kb on - strandat 2521.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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2,518,860 + SMc01583 0.69 -0.0
2,518,894 - SMc01583 0.72 +0.3
2,518,894 - SMc01583 0.72 +0.2
2,518,894 - SMc01583 0.72 +0.2
2,518,993 - SMc01583 0.80 -0.5
2,519,050 - SMc01583 0.85 +0.3
2,519,363 + +0.1
2,519,599 + SMc01584 0.20 +0.0
2,519,728 + SMc01584 0.34 +0.3
2,519,729 + SMc01584 0.34 +0.8
2,519,729 + SMc01584 0.34 +0.8
2,519,729 + SMc01584 0.34 -0.2
2,519,729 + SMc01584 0.34 +0.7
2,519,730 - SMc01584 0.34 +0.0
2,519,730 - SMc01584 0.34 -0.4
2,519,737 - SMc01584 0.35 +1.6
2,519,737 - SMc01584 0.35 +0.7
2,520,112 - SMc01584 0.77 +0.2
2,520,124 + SMc01584 0.78 -0.4
2,520,125 - SMc01584 0.78 -0.9
2,520,379 + -0.2
2,520,383 - +0.1
2,520,388 + +0.3
2,520,389 - -2.5
2,520,389 - -0.0
2,520,389 - +0.2
2,520,449 - +0.3
2,520,451 - -0.2
2,520,451 - -0.9
2,520,468 + -0.3
2,520,718 - +0.3
2,521,288 - +0.3
2,521,289 + -0.7
2,521,289 + -0.7
2,521,289 + +0.5
2,521,290 - -1.1
2,521,292 - +0.2
2,521,292 - -1.4
2,521,292 - +0.2

Or see this region's nucleotide sequence