Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01583 and SMc01584 are separated by 188 nucleotides SMc01584 and SMc01585 are separated by 669 nucleotides
SMc01583: SMc01583 - hypothetical protein, at 2,518,041 to 2,519,231
SMc01583
SMc01584: SMc01584 - hypothetical protein, at 2,519,420 to 2,520,322
SMc01584
SMc01585: SMc01585 - cold shock transcription regulator protein, at 2,520,992 to 2,521,207
SMc01585
Position (kb)
2519
2520
2521 Strain fitness (log2 ratio)
-2
-1
0
1 at 2518.860 kb on + strand, within SMc01583 at 2518.894 kb on - strand, within SMc01583 at 2518.894 kb on - strand, within SMc01583 at 2518.894 kb on - strand, within SMc01583 at 2518.993 kb on - strand, within SMc01583 at 2519.050 kb on - strand, within SMc01583 at 2519.363 kb on + strand at 2519.599 kb on + strand, within SMc01584 at 2519.728 kb on + strand, within SMc01584 at 2519.729 kb on + strand, within SMc01584 at 2519.729 kb on + strand, within SMc01584 at 2519.729 kb on + strand, within SMc01584 at 2519.729 kb on + strand, within SMc01584 at 2519.730 kb on - strand, within SMc01584 at 2519.730 kb on - strand, within SMc01584 at 2519.737 kb on - strand, within SMc01584 at 2519.737 kb on - strand, within SMc01584 at 2520.112 kb on - strand, within SMc01584 at 2520.124 kb on + strand, within SMc01584 at 2520.125 kb on - strand, within SMc01584 at 2520.379 kb on + strand at 2520.383 kb on - strand at 2520.388 kb on + strand at 2520.389 kb on - strand at 2520.389 kb on - strand at 2520.389 kb on - strand at 2520.449 kb on - strand at 2520.451 kb on - strand at 2520.451 kb on - strand at 2520.468 kb on + strand at 2520.718 kb on - strand at 2521.288 kb on - strand at 2521.289 kb on + strand at 2521.289 kb on + strand at 2521.289 kb on + strand at 2521.290 kb on - strand at 2521.292 kb on - strand at 2521.292 kb on - strand at 2521.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 2,518,860 + SMc01583 0.69 -0.0 2,518,894 - SMc01583 0.72 +0.3 2,518,894 - SMc01583 0.72 +0.2 2,518,894 - SMc01583 0.72 +0.2 2,518,993 - SMc01583 0.80 -0.5 2,519,050 - SMc01583 0.85 +0.3 2,519,363 + +0.1 2,519,599 + SMc01584 0.20 +0.0 2,519,728 + SMc01584 0.34 +0.3 2,519,729 + SMc01584 0.34 +0.8 2,519,729 + SMc01584 0.34 +0.8 2,519,729 + SMc01584 0.34 -0.2 2,519,729 + SMc01584 0.34 +0.7 2,519,730 - SMc01584 0.34 +0.0 2,519,730 - SMc01584 0.34 -0.4 2,519,737 - SMc01584 0.35 +1.6 2,519,737 - SMc01584 0.35 +0.7 2,520,112 - SMc01584 0.77 +0.2 2,520,124 + SMc01584 0.78 -0.4 2,520,125 - SMc01584 0.78 -0.9 2,520,379 + -0.2 2,520,383 - +0.1 2,520,388 + +0.3 2,520,389 - -2.5 2,520,389 - -0.0 2,520,389 - +0.2 2,520,449 - +0.3 2,520,451 - -0.2 2,520,451 - -0.9 2,520,468 + -0.3 2,520,718 - +0.3 2,521,288 - +0.3 2,521,289 + -0.7 2,521,289 + -0.7 2,521,289 + +0.5 2,521,290 - -1.1 2,521,292 - +0.2 2,521,292 - -1.4 2,521,292 - +0.2
Or see this region's nucleotide sequence