Strain Fitness in Sinorhizobium meliloti 1021 around SMa1746

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1745 and SMa1746 overlap by 58 nucleotidesSMa1746 and SMa1747 are separated by 292 nucleotides SMa1745: SMa1745 - ABC transporter permease, Fe3+-siderophore transport system, at 986,939 to 988,039 SMa1745 SMa1746: SMa1746 - ABC transporter substrate-binding protein, at 987,982 to 988,983 SMa1746 SMa1747: SMa1747 - TonB-dependent siderophore receptor, at 989,276 to 991,420 SMa1747 Position (kb) 987 988 989Strain fitness (log2 ratio) -2 -1 0 1at 987.014 kb on + strandat 987.015 kb on - strandat 987.015 kb on - strandat 987.015 kb on - strandat 987.150 kb on - strand, within SMa1745at 987.332 kb on + strand, within SMa1745at 987.333 kb on - strand, within SMa1745at 987.409 kb on + strand, within SMa1745at 987.588 kb on + strand, within SMa1745at 987.589 kb on - strand, within SMa1745at 987.589 kb on - strand, within SMa1745at 987.589 kb on - strand, within SMa1745at 987.596 kb on + strand, within SMa1745at 987.597 kb on - strand, within SMa1745at 987.796 kb on + strand, within SMa1745at 988.023 kb on - strandat 988.023 kb on - strandat 988.071 kb on + strandat 988.090 kb on + strand, within SMa1746at 988.125 kb on + strand, within SMa1746at 988.125 kb on + strand, within SMa1746at 988.125 kb on + strand, within SMa1746at 988.126 kb on - strand, within SMa1746at 988.126 kb on - strand, within SMa1746at 988.178 kb on + strand, within SMa1746at 988.179 kb on - strand, within SMa1746at 988.182 kb on + strand, within SMa1746at 988.284 kb on + strand, within SMa1746at 988.285 kb on - strand, within SMa1746at 988.285 kb on - strandat 988.447 kb on + strand, within SMa1746at 988.447 kb on + strand, within SMa1746at 988.450 kb on - strand, within SMa1746at 988.574 kb on + strand, within SMa1746at 988.574 kb on + strand, within SMa1746at 988.598 kb on + strand, within SMa1746at 988.886 kb on + strandat 988.893 kb on + strandat 988.942 kb on + strandat 988.942 kb on + strandat 988.943 kb on - strandat 989.027 kb on - strandat 989.107 kb on + strandat 989.108 kb on - strandat 989.108 kb on - strandat 989.262 kb on - strandat 989.262 kb on - strandat 989.320 kb on - strandat 989.373 kb on + strandat 989.476 kb on + strandat 989.477 kb on - strandat 989.626 kb on - strand, within SMa1747at 989.626 kb on - strand, within SMa1747at 989.702 kb on - strand, within SMa1747at 989.708 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.711 kb on - strand, within SMa1747at 989.711 kb on - strand, within SMa1747at 989.714 kb on + strand, within SMa1747at 989.714 kb on + strand, within SMa1747at 989.769 kb on - strand, within SMa1747at 989.769 kb on - strand, within SMa1747at 989.849 kb on + strand, within SMa1747at 989.850 kb on - strand, within SMa1747at 989.891 kb on + strand, within SMa1747at 989.891 kb on + strand, within SMa1747at 989.892 kb on - strand, within SMa1747at 989.918 kb on - strand, within SMa1747at 989.918 kb on - strand, within SMa1747at 989.967 kb on + strand, within SMa1747at 989.968 kb on - strand, within SMa1747at 989.968 kb on - strand, within SMa1747at 989.968 kb on - strand, within SMa1747

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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987,014 + +0.9
987,015 - +0.1
987,015 - +0.7
987,015 - -0.5
987,150 - SMa1745 0.19 -1.0
987,332 + SMa1745 0.36 -0.0
987,333 - SMa1745 0.36 +0.3
987,409 + SMa1745 0.43 -0.3
987,588 + SMa1745 0.59 +0.2
987,589 - SMa1745 0.59 -0.6
987,589 - SMa1745 0.59 -0.4
987,589 - SMa1745 0.59 +0.3
987,596 + SMa1745 0.60 +0.2
987,597 - SMa1745 0.60 +0.2
987,796 + SMa1745 0.78 -1.4
988,023 - +0.4
988,023 - -0.6
988,071 + -0.7
988,090 + SMa1746 0.11 -1.7
988,125 + SMa1746 0.14 -0.4
988,125 + SMa1746 0.14 -1.6
988,125 + SMa1746 0.14 -0.9
988,126 - SMa1746 0.14 -1.2
988,126 - SMa1746 0.14 -0.4
988,178 + SMa1746 0.20 +0.3
988,179 - SMa1746 0.20 -0.1
988,182 + SMa1746 0.20 +0.7
988,284 + SMa1746 0.30 -0.3
988,285 - SMa1746 0.30 -0.1
988,285 - +0.9
988,447 + SMa1746 0.46 -0.2
988,447 + SMa1746 0.46 -1.0
988,450 - SMa1746 0.47 +0.0
988,574 + SMa1746 0.59 +0.8
988,574 + SMa1746 0.59 -0.9
988,598 + SMa1746 0.61 -0.8
988,886 + -0.0
988,893 + +0.6
988,942 + -0.4
988,942 + -0.3
988,943 - -0.7
989,027 - -0.1
989,107 + -0.4
989,108 - -0.1
989,108 - +0.3
989,262 - -0.3
989,262 - +0.4
989,320 - -0.1
989,373 + -1.4
989,476 + -0.4
989,477 - -0.4
989,626 - SMa1747 0.16 +0.4
989,626 - SMa1747 0.16 +0.6
989,702 - SMa1747 0.20 -0.2
989,708 + SMa1747 0.20 -0.7
989,710 + SMa1747 0.20 +0.4
989,710 + SMa1747 0.20 -0.9
989,710 + SMa1747 0.20 +0.6
989,710 + SMa1747 0.20 +0.1
989,710 + SMa1747 0.20 -1.9
989,711 - SMa1747 0.20 -0.3
989,711 - SMa1747 0.20 -1.4
989,714 + SMa1747 0.20 +0.2
989,714 + SMa1747 0.20 +1.3
989,769 - SMa1747 0.23 +0.0
989,769 - SMa1747 0.23 +0.3
989,849 + SMa1747 0.27 -0.8
989,850 - SMa1747 0.27 +0.8
989,891 + SMa1747 0.29 -0.6
989,891 + SMa1747 0.29 -1.6
989,892 - SMa1747 0.29 -0.4
989,918 - SMa1747 0.30 +1.3
989,918 - SMa1747 0.30 -0.4
989,967 + SMa1747 0.32 +0.8
989,968 - SMa1747 0.32 +0.3
989,968 - SMa1747 0.32 +0.4
989,968 - SMa1747 0.32 +0.2

Or see this region's nucleotide sequence