Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20621 and SM_b20622 are separated by 79 nucleotides SM_b20622 and SM_b20623 are separated by 135 nucleotides
SM_b20621: SM_b20621 - sugar uptake ABC transporter permease, at 1,640,522 to 1,641,478
_b20621
SM_b20622: SM_b20622 - sugar uptake ABC transporter ATP-binding protein, at 1,641,558 to 1,643,081
_b20622
SM_b20623: SM_b20623 - methylthioribose kinase, at 1,643,217 to 1,644,488
_b20623
Position (kb)
1641
1642
1643
1644 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1640.604 kb on + strand at 1640.604 kb on + strand at 1640.607 kb on + strand at 1640.607 kb on + strand at 1640.607 kb on + strand at 1640.608 kb on - strand at 1640.640 kb on - strand, within SM_b20621 at 1640.640 kb on - strand, within SM_b20621 at 1640.640 kb on - strand, within SM_b20621 at 1640.806 kb on + strand, within SM_b20621 at 1640.833 kb on - strand, within SM_b20621 at 1640.847 kb on + strand, within SM_b20621 at 1640.847 kb on + strand, within SM_b20621 at 1640.905 kb on - strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.910 kb on - strand, within SM_b20621 at 1640.951 kb on + strand, within SM_b20621 at 1641.236 kb on + strand, within SM_b20621 at 1641.237 kb on - strand, within SM_b20621 at 1641.237 kb on - strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.283 kb on - strand, within SM_b20621 at 1641.283 kb on - strand, within SM_b20621 at 1641.283 kb on - strand, within SM_b20621 at 1641.490 kb on - strand at 1641.975 kb on + strand, within SM_b20622 at 1641.976 kb on - strand, within SM_b20622 at 1642.024 kb on + strand, within SM_b20622 at 1642.025 kb on - strand, within SM_b20622 at 1642.025 kb on - strand, within SM_b20622 at 1642.120 kb on + strand, within SM_b20622 at 1642.210 kb on - strand, within SM_b20622 at 1642.378 kb on + strand, within SM_b20622 at 1642.378 kb on + strand at 1642.478 kb on + strand, within SM_b20622 at 1642.478 kb on + strand, within SM_b20622 at 1642.479 kb on - strand, within SM_b20622 at 1642.480 kb on + strand, within SM_b20622 at 1642.480 kb on + strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.577 kb on + strand, within SM_b20622 at 1642.916 kb on - strand, within SM_b20622 at 1642.916 kb on - strand, within SM_b20622 at 1642.916 kb on - strand, within SM_b20622 at 1643.105 kb on + strand at 1643.105 kb on + strand at 1643.106 kb on - strand at 1643.160 kb on + strand at 1643.160 kb on + strand at 1643.161 kb on - strand at 1643.161 kb on - strand at 1643.217 kb on - strand at 1643.412 kb on + strand, within SM_b20623 at 1643.412 kb on + strand, within SM_b20623 at 1643.413 kb on - strand, within SM_b20623 at 1643.413 kb on - strand, within SM_b20623 at 1643.563 kb on - strand, within SM_b20623 at 1643.563 kb on - strand, within SM_b20623 at 1643.621 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.968 kb on + strand, within SM_b20623 at 1643.969 kb on - strand, within SM_b20623 at 1643.988 kb on + strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1644.042 kb on + strand, within SM_b20623 at 1644.042 kb on + strand, within SM_b20623 at 1644.043 kb on - strand, within SM_b20623
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,640,604 + -0.1 1,640,604 + -1.1 1,640,607 + -0.1 1,640,607 + -0.1 1,640,607 + -0.7 1,640,608 - +0.1 1,640,640 - SM_b20621 0.12 +0.4 1,640,640 - SM_b20621 0.12 -0.4 1,640,640 - SM_b20621 0.12 -0.2 1,640,806 + SM_b20621 0.30 +0.4 1,640,833 - SM_b20621 0.32 -0.5 1,640,847 + SM_b20621 0.34 -0.5 1,640,847 + SM_b20621 0.34 +0.2 1,640,905 - SM_b20621 0.40 +0.9 1,640,909 + SM_b20621 0.40 -0.2 1,640,909 + SM_b20621 0.40 -0.0 1,640,909 + SM_b20621 0.40 -0.6 1,640,909 + SM_b20621 0.40 +0.4 1,640,910 - SM_b20621 0.41 -0.4 1,640,951 + SM_b20621 0.45 +1.3 1,641,236 + SM_b20621 0.75 +0.9 1,641,237 - SM_b20621 0.75 +0.1 1,641,237 - SM_b20621 0.75 -0.3 1,641,282 + SM_b20621 0.79 +0.2 1,641,282 + SM_b20621 0.79 +0.4 1,641,282 + SM_b20621 0.79 -0.4 1,641,282 + SM_b20621 0.79 -1.2 1,641,283 - SM_b20621 0.80 -0.9 1,641,283 - SM_b20621 0.80 +0.2 1,641,283 - SM_b20621 0.80 +1.0 1,641,490 - -0.9 1,641,975 + SM_b20622 0.27 +0.1 1,641,976 - SM_b20622 0.27 -0.4 1,642,024 + SM_b20622 0.31 +0.4 1,642,025 - SM_b20622 0.31 +0.3 1,642,025 - SM_b20622 0.31 +1.2 1,642,120 + SM_b20622 0.37 +3.6 1,642,210 - SM_b20622 0.43 -0.5 1,642,378 + SM_b20622 0.54 +0.7 1,642,378 + +0.2 1,642,478 + SM_b20622 0.60 +2.5 1,642,478 + SM_b20622 0.60 +0.2 1,642,479 - SM_b20622 0.60 -0.2 1,642,480 + SM_b20622 0.60 +1.6 1,642,480 + SM_b20622 0.60 -0.4 1,642,481 - SM_b20622 0.61 -0.2 1,642,481 - SM_b20622 0.61 -0.5 1,642,481 - SM_b20622 0.61 -0.6 1,642,481 - SM_b20622 0.61 +0.3 1,642,481 - SM_b20622 0.61 +0.1 1,642,481 - SM_b20622 0.61 +1.1 1,642,577 + SM_b20622 0.67 -0.3 1,642,916 - SM_b20622 0.89 +0.5 1,642,916 - SM_b20622 0.89 +0.9 1,642,916 - SM_b20622 0.89 +0.0 1,643,105 + +0.2 1,643,105 + +0.8 1,643,106 - +0.2 1,643,160 + -0.1 1,643,160 + +0.2 1,643,161 - -0.4 1,643,161 - +0.7 1,643,217 - +0.6 1,643,412 + SM_b20623 0.15 -0.0 1,643,412 + SM_b20623 0.15 -0.1 1,643,413 - SM_b20623 0.15 -0.5 1,643,413 - SM_b20623 0.15 -0.8 1,643,563 - SM_b20623 0.27 -0.5 1,643,563 - SM_b20623 0.27 +0.2 1,643,621 + SM_b20623 0.32 +0.6 1,643,623 + SM_b20623 0.32 -0.3 1,643,623 + SM_b20623 0.32 -0.9 1,643,623 + SM_b20623 0.32 -0.5 1,643,623 + SM_b20623 0.32 -0.6 1,643,623 + SM_b20623 0.32 +0.4 1,643,623 + SM_b20623 0.32 -0.2 1,643,623 + SM_b20623 0.32 +0.3 1,643,623 + SM_b20623 0.32 -0.5 1,643,623 + SM_b20623 0.32 -0.6 1,643,624 - SM_b20623 0.32 +0.2 1,643,624 - SM_b20623 0.32 +0.0 1,643,624 - SM_b20623 0.32 -0.1 1,643,968 + SM_b20623 0.59 -0.4 1,643,969 - SM_b20623 0.59 +0.2 1,643,988 + SM_b20623 0.61 -0.5 1,643,989 - SM_b20623 0.61 -1.0 1,643,989 - SM_b20623 0.61 -0.3 1,643,989 - SM_b20623 0.61 -0.0 1,644,042 + SM_b20623 0.65 -0.4 1,644,042 + SM_b20623 0.65 -1.4 1,644,043 - SM_b20623 0.65 +0.5
Or see this region's nucleotide sequence