Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20441 and SM_b20442 are separated by 39 nucleotides SM_b20442 and SM_b20443 are separated by 67 nucleotides SM_b20443 and SM_b20444 are separated by 5 nucleotides
SM_b20441: SM_b20441 - transcriptional regulator, at 452,507 to 453,247
_b20441
SM_b20442: SM_b20442 - substrate-binding protein, at 453,287 to 454,261
_b20442
SM_b20443: SM_b20443 - permease, at 454,329 to 454,901
_b20443
SM_b20444: SM_b20444 - hypothetical protein, at 454,907 to 456,313
_b20444
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 452.345 kb on - strand at 452.441 kb on + strand at 452.441 kb on + strand at 452.447 kb on - strand at 452.670 kb on + strand, within SM_b20441 at 452.670 kb on + strand, within SM_b20441 at 452.670 kb on + strand, within SM_b20441 at 452.671 kb on - strand, within SM_b20441 at 452.720 kb on + strand, within SM_b20441 at 452.720 kb on + strand, within SM_b20441 at 452.720 kb on + strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.857 kb on + strand, within SM_b20441 at 452.858 kb on - strand, within SM_b20441 at 452.858 kb on - strand, within SM_b20441 at 453.044 kb on + strand, within SM_b20441 at 453.044 kb on + strand, within SM_b20441 at 453.386 kb on + strand, within SM_b20442 at 453.387 kb on - strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.462 kb on - strand, within SM_b20442 at 453.542 kb on - strand, within SM_b20442 at 453.599 kb on + strand, within SM_b20442 at 453.600 kb on - strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.611 kb on - strand, within SM_b20442 at 453.643 kb on + strand, within SM_b20442 at 453.657 kb on + strand, within SM_b20442 at 453.658 kb on - strand, within SM_b20442 at 453.680 kb on + strand, within SM_b20442 at 453.680 kb on + strand, within SM_b20442 at 453.681 kb on - strand, within SM_b20442 at 453.719 kb on + strand, within SM_b20442 at 453.719 kb on + strand, within SM_b20442 at 453.720 kb on - strand, within SM_b20442 at 453.720 kb on - strand, within SM_b20442 at 453.722 kb on + strand, within SM_b20442 at 453.796 kb on - strand, within SM_b20442 at 453.812 kb on + strand, within SM_b20442 at 453.872 kb on + strand, within SM_b20442 at 453.873 kb on - strand, within SM_b20442 at 453.873 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 454.416 kb on + strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.495 kb on - strand, within SM_b20443 at 454.513 kb on - strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand at 454.617 kb on + strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.624 kb on - strand, within SM_b20443 at 454.693 kb on - strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.753 kb on + strand, within SM_b20443 at 454.779 kb on + strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.854 kb on + strand at 454.935 kb on + strand at 454.936 kb on - strand at 454.936 kb on - strand at 454.991 kb on + strand at 455.003 kb on + strand at 455.004 kb on - strand at 455.135 kb on + strand, within SM_b20444 at 455.136 kb on - strand, within SM_b20444
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 452,345 - +1.3 452,441 + +0.2 452,441 + +0.2 452,447 - +0.2 452,670 + SM_b20441 0.22 +0.0 452,670 + SM_b20441 0.22 +0.0 452,670 + SM_b20441 0.22 -0.3 452,671 - SM_b20441 0.22 -1.6 452,720 + SM_b20441 0.29 +0.2 452,720 + SM_b20441 0.29 -0.2 452,720 + SM_b20441 0.29 -0.6 452,721 - SM_b20441 0.29 +0.2 452,721 - SM_b20441 0.29 -0.6 452,721 - SM_b20441 0.29 -1.0 452,721 - SM_b20441 0.29 +0.9 452,721 - SM_b20441 0.29 -0.5 452,721 - SM_b20441 0.29 +0.1 452,857 + SM_b20441 0.47 -0.6 452,858 - SM_b20441 0.47 +0.4 452,858 - SM_b20441 0.47 -0.7 453,044 + SM_b20441 0.72 -0.4 453,044 + SM_b20441 0.72 -0.8 453,386 + SM_b20442 0.10 -0.6 453,387 - SM_b20442 0.10 -0.6 453,461 + SM_b20442 0.18 +0.7 453,461 + SM_b20442 0.18 -0.4 453,461 + SM_b20442 0.18 -0.8 453,462 - SM_b20442 0.18 +0.1 453,542 - SM_b20442 0.26 -0.4 453,599 + SM_b20442 0.32 -1.2 453,600 - SM_b20442 0.32 +0.6 453,610 + SM_b20442 0.33 +0.1 453,610 + SM_b20442 0.33 +0.2 453,610 + SM_b20442 0.33 -0.2 453,611 - SM_b20442 0.33 +2.3 453,643 + SM_b20442 0.37 -0.7 453,657 + SM_b20442 0.38 +0.2 453,658 - SM_b20442 0.38 -0.0 453,680 + SM_b20442 0.40 -0.4 453,680 + SM_b20442 0.40 -1.1 453,681 - SM_b20442 0.40 -0.2 453,719 + SM_b20442 0.44 -0.2 453,719 + SM_b20442 0.44 +0.0 453,720 - SM_b20442 0.44 +0.0 453,720 - SM_b20442 0.44 +0.7 453,722 + SM_b20442 0.45 -0.3 453,796 - SM_b20442 0.52 -0.2 453,812 + SM_b20442 0.54 -0.2 453,872 + SM_b20442 0.60 -1.0 453,873 - SM_b20442 0.60 -0.8 453,873 - SM_b20442 0.60 -0.1 453,962 - SM_b20442 0.69 -0.2 453,962 - SM_b20442 0.69 -0.3 454,416 + SM_b20443 0.15 +0.3 454,417 - SM_b20443 0.15 -0.8 454,417 - SM_b20443 0.15 +1.4 454,495 - SM_b20443 0.29 -0.3 454,513 - SM_b20443 0.32 -0.0 454,617 + SM_b20443 0.50 -0.3 454,617 + SM_b20443 0.50 -0.8 454,617 + -0.6 454,617 + SM_b20443 0.50 -0.0 454,618 - SM_b20443 0.50 -0.2 454,618 - SM_b20443 0.50 -0.7 454,618 - SM_b20443 0.50 -0.6 454,618 - SM_b20443 0.50 -0.1 454,618 - SM_b20443 0.50 -0.6 454,624 - SM_b20443 0.51 -0.3 454,693 - SM_b20443 0.64 -0.6 454,716 + SM_b20443 0.68 -0.5 454,716 + SM_b20443 0.68 +1.3 454,753 + SM_b20443 0.74 -0.8 454,779 + SM_b20443 0.79 -0.1 454,780 - SM_b20443 0.79 +0.2 454,780 - SM_b20443 0.79 -0.0 454,854 + -0.1 454,935 + -0.7 454,936 - -0.3 454,936 - +0.3 454,991 + -0.5 455,003 + -0.3 455,004 - -0.4 455,135 + SM_b20444 0.16 +0.2 455,136 - SM_b20444 0.16 -2.6
Or see this region's nucleotide sequence