Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03788 and SMc03789 overlap by 4 nucleotides SMc03789 and SMc03790 overlap by 158 nucleotides SMc03790 and SMc03791 are separated by 169 nucleotides
SMc03788: SMc03788 - DNA polymerase III subunit alpha, at 3,452,510 to 3,455,860
SMc03788
SMc03789: SMc03789 - hypothetical protein, at 3,455,857 to 3,457,470
SMc03789
SMc03790: SMc03790 - hypothetical protein, at 3,457,313 to 3,458,266
SMc03790
SMc03791: SMc03791 - hypothetical protein, at 3,458,436 to 3,458,870
SMc03791
Position (kb)
3455
3456
3457
3458 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3454.859 kb on - strand, within SMc03788 at 3454.914 kb on + strand, within SMc03788 at 3454.945 kb on - strand, within SMc03788 at 3454.945 kb on - strand, within SMc03788 at 3455.064 kb on + strand, within SMc03788 at 3455.271 kb on + strand, within SMc03788 at 3455.286 kb on + strand, within SMc03788 at 3455.376 kb on + strand, within SMc03788 at 3455.376 kb on + strand, within SMc03788 at 3455.376 kb on + strand, within SMc03788 at 3455.377 kb on - strand, within SMc03788 at 3455.398 kb on - strand, within SMc03788 at 3455.771 kb on + strand at 3455.771 kb on + strand at 3455.772 kb on - strand at 3455.967 kb on - strand at 3456.410 kb on + strand, within SMc03789 at 3456.517 kb on + strand, within SMc03789 at 3456.518 kb on - strand, within SMc03789 at 3457.107 kb on + strand, within SMc03789 at 3457.108 kb on - strand, within SMc03789 at 3457.108 kb on - strand, within SMc03789 at 3457.251 kb on + strand, within SMc03789 at 3457.455 kb on + strand at 3457.863 kb on + strand, within SMc03790 at 3457.864 kb on - strand, within SMc03790 at 3457.885 kb on - strand at 3457.971 kb on + strand, within SMc03790 at 3457.971 kb on + strand, within SMc03790 at 3457.971 kb on + strand, within SMc03790 at 3458.410 kb on + strand at 3458.412 kb on + strand at 3458.413 kb on - strand at 3458.413 kb on - strand at 3458.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 3,454,859 - SMc03788 0.70 -0.0 3,454,914 + SMc03788 0.72 +0.4 3,454,945 - SMc03788 0.73 -0.4 3,454,945 - SMc03788 0.73 -0.2 3,455,064 + SMc03788 0.76 +0.2 3,455,271 + SMc03788 0.82 +0.1 3,455,286 + SMc03788 0.83 +0.5 3,455,376 + SMc03788 0.86 -0.0 3,455,376 + SMc03788 0.86 -1.1 3,455,376 + SMc03788 0.86 -0.6 3,455,377 - SMc03788 0.86 +0.5 3,455,398 - SMc03788 0.86 -2.3 3,455,771 + -0.5 3,455,771 + -0.6 3,455,772 - -0.9 3,455,967 - -0.5 3,456,410 + SMc03789 0.34 +0.3 3,456,517 + SMc03789 0.41 -0.0 3,456,518 - SMc03789 0.41 -0.1 3,457,107 + SMc03789 0.77 +2.0 3,457,108 - SMc03789 0.78 +0.5 3,457,108 - SMc03789 0.78 -0.2 3,457,251 + SMc03789 0.86 +1.1 3,457,455 + +0.3 3,457,863 + SMc03790 0.58 -0.2 3,457,864 - SMc03790 0.58 -0.0 3,457,885 - +0.7 3,457,971 + SMc03790 0.69 -0.3 3,457,971 + SMc03790 0.69 -0.3 3,457,971 + SMc03790 0.69 +1.4 3,458,410 + -0.9 3,458,412 + -0.2 3,458,413 - -0.0 3,458,413 - -0.2 3,458,413 - -0.5
Or see this region's nucleotide sequence