Strain Fitness in Sinorhizobium meliloti 1021 around SMc02436

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02435 and SMc02436 are separated by 6 nucleotidesSMc02436 and SMc02437 are separated by 68 nucleotides SMc02435: SMc02435 - methyltransferase, at 2,818,114 to 2,818,995 SMc02435 SMc02436: SMc02436 - peptide chain release factor 1, at 2,819,002 to 2,820,084 SMc02436 SMc02437: SMc02437 - phosphoenolpyruvate phosphotransferase PTSP (enzyme I-Ntr) protein, at 2,820,153 to 2,822,420 SMc02437 Position (kb) 2819 2820 2821Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2818.138 kb on - strandat 2818.264 kb on + strand, within SMc02435at 2818.367 kb on + strand, within SMc02435at 2818.435 kb on - strand, within SMc02435at 2818.549 kb on - strand, within SMc02435at 2819.045 kb on + strandat 2819.046 kb on - strandat 2819.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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2,818,138 - -2.9
2,818,264 + SMc02435 0.17 -2.0
2,818,367 + SMc02435 0.29 +2.2
2,818,435 - SMc02435 0.36 -3.3
2,818,549 - SMc02435 0.49 +1.2
2,819,045 + +0.6
2,819,046 - +0.7
2,819,046 - +0.1

Or see this region's nucleotide sequence