Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21669

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21364 and SM_b21365 overlap by 8 nucleotidesSM_b21365 and SM_b21669 overlap by 19 nucleotidesSM_b21669 and SM_b21366 are separated by 40 nucleotidesSM_b21366 and SM_b21367 overlap by 10 nucleotides SM_b21364: SM_b21364 - membrane-anchored oxidoreductase, L-sorbosone dehydrogenase, at 1,027,640 to 1,029,193 _b21364 SM_b21365: SM_b21365 - hypothetical protein, at 1,029,186 to 1,029,638 _b21365 SM_b21669: SM_b21669 - hypothetical protein, at 1,029,620 to 1,029,847 _b21669 SM_b21366: SM_b21366 - hypothetical protein, at 1,029,888 to 1,030,469 _b21366 SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584 _b21367 Position (kb) 1029 1030Strain fitness (log2 ratio) -2 -1 0 1 2at 1028.631 kb on + strand, within SM_b21364at 1028.637 kb on + strand, within SM_b21364at 1028.638 kb on - strand, within SM_b21364at 1028.667 kb on + strand, within SM_b21364at 1028.667 kb on + strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.921 kb on - strand, within SM_b21364at 1029.187 kb on + strandat 1029.187 kb on + strandat 1029.187 kb on + strandat 1029.188 kb on - strandat 1029.441 kb on + strand, within SM_b21365at 1029.442 kb on - strand, within SM_b21365at 1029.554 kb on + strand, within SM_b21365at 1029.682 kb on + strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.908 kb on + strandat 1029.908 kb on + strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.920 kb on + strandat 1029.921 kb on - strandat 1030.218 kb on + strand, within SM_b21366at 1030.218 kb on + strand, within SM_b21366at 1030.218 kb on + strand, within SM_b21366at 1030.218 kb on + strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.346 kb on + strand, within SM_b21366at 1030.347 kb on - strand, within SM_b21366at 1030.374 kb on + strand, within SM_b21366at 1030.374 kb on + strand, within SM_b21366at 1030.375 kb on - strand, within SM_b21366at 1030.562 kb on + strandat 1030.563 kb on - strandat 1030.563 kb on - strandat 1030.597 kb on + strand, within SM_b21367at 1030.726 kb on - strand, within SM_b21367at 1030.726 kb on - strand, within SM_b21367at 1030.755 kb on + strand, within SM_b21367at 1030.756 kb on - strand, within SM_b21367

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,028,631 + SM_b21364 0.64 -0.8
1,028,637 + SM_b21364 0.64 -0.2
1,028,638 - SM_b21364 0.64 -0.0
1,028,667 + SM_b21364 0.66 +0.5
1,028,667 + SM_b21364 0.66 +0.7
1,028,668 - SM_b21364 0.66 -0.2
1,028,668 - SM_b21364 0.66 +1.2
1,028,668 - SM_b21364 0.66 -0.7
1,028,668 - SM_b21364 0.66 -0.4
1,028,668 - SM_b21364 0.66 -0.3
1,028,921 - SM_b21364 0.82 -0.2
1,029,187 + -0.4
1,029,187 + -1.1
1,029,187 + -0.3
1,029,188 - -1.2
1,029,441 + SM_b21365 0.56 +0.1
1,029,442 - SM_b21365 0.57 -0.2
1,029,554 + SM_b21365 0.81 +0.6
1,029,682 + SM_b21669 0.27 -0.8
1,029,683 - SM_b21669 0.28 -1.0
1,029,683 - SM_b21669 0.28 -0.3
1,029,683 - SM_b21669 0.28 -1.8
1,029,908 + -0.3
1,029,908 + +0.0
1,029,909 - -0.0
1,029,909 - -0.4
1,029,909 - -0.5
1,029,909 - -0.4
1,029,909 - -0.6
1,029,920 + -0.8
1,029,921 - -0.4
1,030,218 + SM_b21366 0.57 -0.6
1,030,218 + SM_b21366 0.57 -0.3
1,030,218 + SM_b21366 0.57 -0.2
1,030,218 + SM_b21366 0.57 -0.1
1,030,219 - SM_b21366 0.57 +1.1
1,030,219 - SM_b21366 0.57 -0.2
1,030,219 - SM_b21366 0.57 +0.7
1,030,219 - SM_b21366 0.57 +0.3
1,030,346 + SM_b21366 0.79 +1.8
1,030,347 - SM_b21366 0.79 +0.1
1,030,374 + SM_b21366 0.84 -0.2
1,030,374 + SM_b21366 0.84 +0.1
1,030,375 - SM_b21366 0.84 -0.2
1,030,562 + -0.1
1,030,563 - +0.1
1,030,563 - +0.6
1,030,597 + SM_b21367 0.12 -0.5
1,030,726 - SM_b21367 0.24 +0.4
1,030,726 - SM_b21367 0.24 -0.5
1,030,755 + SM_b21367 0.26 -0.3
1,030,756 - SM_b21367 0.26 -0.5

Or see this region's nucleotide sequence