Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21585

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21583 and SM_b21584 are separated by 39 nucleotidesSM_b21584 and SM_b21585 overlap by 4 nucleotidesSM_b21585 and SM_b21586 are separated by 14 nucleotides SM_b21583: SM_b21583 - hypothetical protein, at 1,122,540 to 1,122,902 _b21583 SM_b21584: SM_b21584 - hypothetical protein, at 1,122,942 to 1,123,799 _b21584 SM_b21585: SM_b21585 - hypothetical protein, at 1,123,796 to 1,125,682 _b21585 SM_b21586: SM_b21586 - glutathione synthetase, at 1,125,697 to 1,126,743 _b21586 Position (kb) 1123 1124 1125 1126Strain fitness (log2 ratio) -1 0 1 2at 1122.937 kb on - strandat 1123.046 kb on + strand, within SM_b21584at 1123.249 kb on - strand, within SM_b21584at 1123.249 kb on - strand, within SM_b21584at 1123.283 kb on - strand, within SM_b21584at 1123.283 kb on - strand, within SM_b21584at 1123.341 kb on + strandat 1123.341 kb on + strand, within SM_b21584at 1123.341 kb on + strand, within SM_b21584at 1123.341 kb on + strand, within SM_b21584at 1123.344 kb on + strand, within SM_b21584at 1123.345 kb on - strand, within SM_b21584at 1123.420 kb on - strand, within SM_b21584at 1123.420 kb on - strand, within SM_b21584at 1123.732 kb on + strandat 1123.733 kb on - strandat 1123.773 kb on - strandat 1123.951 kb on - strandat 1124.047 kb on + strand, within SM_b21585at 1124.201 kb on - strand, within SM_b21585at 1124.599 kb on - strand, within SM_b21585at 1124.748 kb on - strand, within SM_b21585at 1124.756 kb on + strand, within SM_b21585at 1124.757 kb on - strand, within SM_b21585at 1124.757 kb on - strand, within SM_b21585at 1124.847 kb on - strand, within SM_b21585at 1124.847 kb on - strand, within SM_b21585at 1124.847 kb on - strand, within SM_b21585at 1125.162 kb on - strand, within SM_b21585at 1125.162 kb on - strand, within SM_b21585at 1125.670 kb on + strandat 1125.670 kb on + strandat 1125.671 kb on - strandat 1125.671 kb on - strandat 1125.671 kb on - strandat 1125.683 kb on + strandat 1125.683 kb on + strandat 1125.684 kb on - strandat 1125.742 kb on + strandat 1125.743 kb on - strandat 1125.745 kb on + strandat 1125.747 kb on + strandat 1125.748 kb on - strandat 1125.748 kb on - strandat 1125.748 kb on - strandat 1125.748 kb on - strandat 1125.799 kb on + strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.871 kb on - strand, within SM_b21586at 1125.871 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1126.016 kb on - strand, within SM_b21586at 1126.016 kb on - strand, within SM_b21586at 1126.068 kb on - strand, within SM_b21586at 1126.108 kb on + strand, within SM_b21586at 1126.108 kb on + strand, within SM_b21586at 1126.109 kb on - strand, within SM_b21586at 1126.313 kb on - strand, within SM_b21586at 1126.330 kb on + strand, within SM_b21586at 1126.502 kb on + strand, within SM_b21586at 1126.502 kb on + strand, within SM_b21586at 1126.503 kb on - strand, within SM_b21586at 1126.567 kb on - strand, within SM_b21586at 1126.567 kb on - strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,122,937 - -0.8
1,123,046 + SM_b21584 0.12 -0.3
1,123,249 - SM_b21584 0.36 +0.1
1,123,249 - SM_b21584 0.36 +0.5
1,123,283 - SM_b21584 0.40 -0.5
1,123,283 - SM_b21584 0.40 +0.1
1,123,341 + +1.8
1,123,341 + SM_b21584 0.47 -0.7
1,123,341 + SM_b21584 0.47 -0.3
1,123,341 + SM_b21584 0.47 -0.8
1,123,344 + SM_b21584 0.47 +0.2
1,123,345 - SM_b21584 0.47 -0.2
1,123,420 - SM_b21584 0.56 -0.4
1,123,420 - SM_b21584 0.56 +0.6
1,123,732 + -0.7
1,123,733 - -0.2
1,123,773 - -0.3
1,123,951 - +0.4
1,124,047 + SM_b21585 0.13 +0.3
1,124,201 - SM_b21585 0.21 +0.8
1,124,599 - SM_b21585 0.43 -1.5
1,124,748 - SM_b21585 0.50 +0.6
1,124,756 + SM_b21585 0.51 -1.1
1,124,757 - SM_b21585 0.51 +0.7
1,124,757 - SM_b21585 0.51 +0.3
1,124,847 - SM_b21585 0.56 -0.1
1,124,847 - SM_b21585 0.56 +0.6
1,124,847 - SM_b21585 0.56 +0.3
1,125,162 - SM_b21585 0.72 +0.7
1,125,162 - SM_b21585 0.72 +0.5
1,125,670 + +0.1
1,125,670 + +0.0
1,125,671 - -0.2
1,125,671 - -0.1
1,125,671 - +1.2
1,125,683 + -0.1
1,125,683 + +0.0
1,125,684 - +0.6
1,125,742 + -0.6
1,125,743 - -1.2
1,125,745 + +1.0
1,125,747 + +0.9
1,125,748 - +0.3
1,125,748 - +0.0
1,125,748 - +0.1
1,125,748 - +0.6
1,125,799 + -0.1
1,125,800 - -1.7
1,125,800 - -0.9
1,125,800 - -0.7
1,125,800 - +0.3
1,125,800 - +0.2
1,125,871 - SM_b21586 0.17 -0.4
1,125,871 - SM_b21586 0.17 +0.7
1,125,954 - SM_b21586 0.25 -0.1
1,125,954 - SM_b21586 0.25 +0.0
1,125,954 - SM_b21586 0.25 -0.2
1,126,016 - SM_b21586 0.30 -0.4
1,126,016 - SM_b21586 0.30 -0.5
1,126,068 - SM_b21586 0.35 -0.1
1,126,108 + SM_b21586 0.39 +0.0
1,126,108 + SM_b21586 0.39 -0.8
1,126,109 - SM_b21586 0.39 -1.5
1,126,313 - SM_b21586 0.59 +0.4
1,126,330 + SM_b21586 0.60 +1.6
1,126,502 + SM_b21586 0.77 -0.4
1,126,502 + SM_b21586 0.77 -0.3
1,126,503 - SM_b21586 0.77 -0.4
1,126,567 - SM_b21586 0.83 -0.3
1,126,567 - SM_b21586 0.83 -0.7
1,126,568 + SM_b21586 0.83 +1.0
1,126,568 + SM_b21586 0.83 -1.0
1,126,568 + SM_b21586 0.83 +0.5
1,126,568 + SM_b21586 0.83 +0.0

Or see this region's nucleotide sequence