Strain Fitness in Sinorhizobium meliloti 1021 around SMc01375

Experiment: R2A-HEPES control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01376 and SMc01375 are separated by 468 nucleotidesSMc01375 and SMc01374 are separated by 279 nucleotides SMc01376: SMc01376 - ABC transporter ATP-binding protein, at 1,401,492 to 1,402,178 SMc01376 SMc01375: SMc01375 - DNA polymerase III subunit alpha, at 1,402,647 to 1,406,156 SMc01375 SMc01374: SMc01374 - hypothetical protein, at 1,406,436 to 1,407,662 SMc01374 Position (kb) 1402 1403 1404 1405 1406 1407Strain fitness (log2 ratio) -1 0 1at 1402.177 kb on - strandat 1402.312 kb on + strandat 1402.312 kb on + strandat 1402.410 kb on + strandat 1402.410 kb on + strandat 1402.411 kb on - strandat 1402.541 kb on + strandat 1402.542 kb on - strandat 1406.285 kb on + strandat 1406.322 kb on - strandat 1406.322 kb on - strandat 1406.322 kb on - strandat 1406.736 kb on + strand, within SMc01374at 1406.737 kb on - strand, within SMc01374at 1406.883 kb on + strand, within SMc01374at 1406.990 kb on + strand, within SMc01374

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
remove
1,402,177 - -1.0
1,402,312 + -1.2
1,402,312 + +0.2
1,402,410 + -0.0
1,402,410 + +0.2
1,402,411 - +0.4
1,402,541 + +0.1
1,402,542 - +0.1
1,406,285 + +0.2
1,406,322 - +0.6
1,406,322 - +0.1
1,406,322 - -0.3
1,406,736 + SMc01374 0.24 -0.4
1,406,737 - SMc01374 0.25 -0.1
1,406,883 + SMc01374 0.36 -0.3
1,406,990 + SMc01374 0.45 -0.1

Or see this region's nucleotide sequence