Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1331 and SMa1332 are separated by 29 nucleotides SMa1332 and SMa1334 are separated by 11 nucleotides SMa1334 and SMa5030 are separated by 81 nucleotides
SMa1331: SMa1331 - hypothetical protein, at 727,741 to 728,154
SMa1331
SMa1332: SMa1332 - hypothetical protein, at 728,184 to 729,026
SMa1332
SMa1334: SMa1334 - hypothetical protein, at 729,038 to 730,234
SMa1334
SMa5030: SMa5030 - TetR family transcriptional regulator, at 730,316 to 730,981
SMa5030
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.195 kb on + strand at 728.195 kb on + strand at 728.315 kb on - strand, within SMa1332 at 728.315 kb on - strand, within SMa1332 at 728.469 kb on - strand, within SMa1332 at 728.478 kb on - strand, within SMa1332 at 728.542 kb on + strand, within SMa1332 at 728.542 kb on + strand, within SMa1332 at 728.542 kb on + strand, within SMa1332 at 728.543 kb on - strand, within SMa1332 at 728.587 kb on + strand, within SMa1332 at 728.602 kb on + strand, within SMa1332 at 728.603 kb on - strand, within SMa1332 at 728.765 kb on + strand at 728.885 kb on - strand, within SMa1332 at 728.892 kb on - strand, within SMa1332 at 728.931 kb on - strand, within SMa1332 at 729.018 kb on + strand at 729.139 kb on + strand at 729.139 kb on + strand at 729.140 kb on - strand at 729.140 kb on - strand at 729.140 kb on - strand at 729.140 kb on - strand at 729.413 kb on - strand, within SMa1334 at 729.413 kb on - strand, within SMa1334 at 729.413 kb on - strand, within SMa1334 at 729.549 kb on - strand, within SMa1334 at 729.840 kb on + strand, within SMa1334 at 729.840 kb on + strand, within SMa1334 at 729.840 kb on + strand, within SMa1334 at 729.840 kb on + strand, within SMa1334 at 729.841 kb on - strand, within SMa1334 at 729.841 kb on - strand, within SMa1334 at 729.841 kb on - strand, within SMa1334 at 729.841 kb on - strand, within SMa1334 at 729.841 kb on - strand, within SMa1334 at 729.922 kb on + strand, within SMa1334 at 729.923 kb on - strand, within SMa1334 at 730.179 kb on + strand at 730.180 kb on - strand at 730.221 kb on + strand at 730.221 kb on + strand at 730.222 kb on - strand at 730.225 kb on + strand at 730.226 kb on - strand at 730.226 kb on - strand at 730.360 kb on + strand at 730.360 kb on + strand at 730.450 kb on + strand, within SMa5030 at 730.451 kb on - strand, within SMa5030 at 730.453 kb on - strand, within SMa5030 at 730.514 kb on + strand, within SMa5030 at 730.720 kb on + strand, within SMa5030 at 730.720 kb on + strand, within SMa5030 at 730.721 kb on - strand, within SMa5030 at 730.721 kb on - strand, within SMa5030 at 731.096 kb on - strand at 731.119 kb on + strand at 731.119 kb on + strand at 731.119 kb on + strand at 731.119 kb on + strand at 731.120 kb on - strand at 731.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 728,195 + -0.0 728,195 + -0.4 728,315 - SMa1332 0.16 +0.2 728,315 - SMa1332 0.16 +0.0 728,469 - SMa1332 0.34 -0.0 728,478 - SMa1332 0.35 -0.8 728,542 + SMa1332 0.42 -0.2 728,542 + SMa1332 0.42 +0.2 728,542 + SMa1332 0.42 -0.5 728,543 - SMa1332 0.43 +0.5 728,587 + SMa1332 0.48 -0.9 728,602 + SMa1332 0.50 -0.0 728,603 - SMa1332 0.50 -0.5 728,765 + +0.5 728,885 - SMa1332 0.83 -0.6 728,892 - SMa1332 0.84 +0.2 728,931 - SMa1332 0.89 -0.3 729,018 + +1.5 729,139 + +0.2 729,139 + -0.9 729,140 - +0.8 729,140 - +1.5 729,140 - -0.4 729,140 - -0.7 729,413 - SMa1334 0.31 +0.0 729,413 - SMa1334 0.31 +0.7 729,413 - SMa1334 0.31 +0.4 729,549 - SMa1334 0.43 -0.0 729,840 + SMa1334 0.67 -0.3 729,840 + SMa1334 0.67 -0.0 729,840 + SMa1334 0.67 -0.1 729,840 + SMa1334 0.67 +0.8 729,841 - SMa1334 0.67 +1.2 729,841 - SMa1334 0.67 -0.5 729,841 - SMa1334 0.67 +0.4 729,841 - SMa1334 0.67 +0.3 729,841 - SMa1334 0.67 +1.3 729,922 + SMa1334 0.74 -0.1 729,923 - SMa1334 0.74 +0.8 730,179 + -0.5 730,180 - +0.6 730,221 + -0.5 730,221 + +0.8 730,222 - +0.2 730,225 + +1.4 730,226 - +1.4 730,226 - +1.5 730,360 + -0.3 730,360 + +0.2 730,450 + SMa5030 0.20 +0.4 730,451 - SMa5030 0.20 -0.2 730,453 - SMa5030 0.21 -0.5 730,514 + SMa5030 0.30 -0.4 730,720 + SMa5030 0.61 -1.1 730,720 + SMa5030 0.61 -1.4 730,721 - SMa5030 0.61 -0.2 730,721 - SMa5030 0.61 -0.2 731,096 - -0.0 731,119 + -0.6 731,119 + +0.2 731,119 + +2.1 731,119 + -0.0 731,120 - -1.8 731,120 - +0.2
Or see this region's nucleotide sequence