Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0773 and SMa0774 are separated by 6 nucleotides SMa0774 and SMa0775 are separated by 325 nucleotides
SMa0773: SMa0773 - NoeA host specific nodulation protein, at 419,284 to 420,714
SMa0773
SMa0774: SMa0774 - NoeB host specific nodulation protein, at 420,721 to 422,382
SMa0774
SMa0775: SMa0775 - hypothetical protein, at 422,708 to 423,034
SMa0775
Position (kb) 420
421
422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 419.769 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.770 kb on - strand, within SMa0773 at 419.962 kb on - strand, within SMa0773 at 419.981 kb on + strand, within SMa0773 at 419.982 kb on - strand, within SMa0773 at 420.106 kb on + strand, within SMa0773 at 420.125 kb on - strand, within SMa0773 at 420.158 kb on - strand, within SMa0773 at 420.213 kb on + strand, within SMa0773 at 420.237 kb on - strand, within SMa0773 at 420.666 kb on - strand at 420.668 kb on + strand at 420.668 kb on + strand at 420.669 kb on - strand at 420.744 kb on - strand at 420.744 kb on - strand at 420.755 kb on + strand at 420.755 kb on + strand at 420.796 kb on + strand at 420.796 kb on + strand at 420.797 kb on - strand at 420.799 kb on - strand at 421.040 kb on + strand, within SMa0774 at 421.041 kb on - strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.050 kb on + strand, within SMa0774 at 421.084 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.144 kb on - strand, within SMa0774 at 421.183 kb on + strand, within SMa0774 at 421.232 kb on + strand, within SMa0774 at 421.520 kb on + strand, within SMa0774 at 421.713 kb on + strand, within SMa0774 at 421.851 kb on + strand, within SMa0774 at 421.864 kb on + strand, within SMa0774 at 421.910 kb on - strand, within SMa0774 at 421.915 kb on - strand, within SMa0774 at 421.947 kb on - strand, within SMa0774 at 422.094 kb on + strand, within SMa0774 at 422.094 kb on + strand, within SMa0774 at 422.095 kb on - strand, within SMa0774 at 422.122 kb on - strand, within SMa0774 at 422.138 kb on - strand, within SMa0774 at 422.273 kb on + strand at 422.274 kb on - strand at 422.276 kb on + strand at 422.315 kb on - strand at 422.346 kb on + strand at 422.346 kb on + strand at 422.346 kb on + strand at 422.346 kb on + strand at 422.347 kb on - strand at 422.347 kb on - strand at 422.347 kb on - strand at 422.347 kb on - strand at 422.430 kb on - strand at 422.430 kb on - strand at 422.559 kb on - strand at 422.578 kb on - strand at 422.589 kb on + strand at 422.616 kb on + strand at 422.616 kb on + strand at 422.619 kb on - strand at 422.622 kb on + strand at 422.679 kb on + strand at 422.847 kb on - strand, within SMa0775 at 422.927 kb on - strand, within SMa0775 at 422.990 kb on + strand, within SMa0775 at 422.991 kb on - strand, within SMa0775 at 423.140 kb on + strand at 423.140 kb on + strand at 423.140 kb on + strand at 423.140 kb on + strand at 423.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 419,769 + SMa0773 0.34 +0.4 419,769 + SMa0773 0.34 +0.6 419,770 - SMa0773 0.34 -0.5 419,962 - SMa0773 0.47 -0.2 419,981 + SMa0773 0.49 +0.0 419,982 - SMa0773 0.49 +0.3 420,106 + SMa0773 0.57 -1.6 420,125 - SMa0773 0.59 -0.6 420,158 - SMa0773 0.61 +0.0 420,213 + SMa0773 0.65 -0.7 420,237 - SMa0773 0.67 +0.2 420,666 - -1.0 420,668 + -0.3 420,668 + -0.2 420,669 - -0.2 420,744 - +0.1 420,744 - -0.6 420,755 + -0.2 420,755 + +0.3 420,796 + +0.5 420,796 + +0.2 420,797 - -0.6 420,799 - -0.6 421,040 + SMa0774 0.19 -0.4 421,041 - SMa0774 0.19 -0.1 421,044 + SMa0774 0.19 -0.7 421,044 + SMa0774 0.19 -0.7 421,050 + SMa0774 0.20 +0.5 421,084 - SMa0774 0.22 -0.6 421,120 - SMa0774 0.24 +1.7 421,120 - SMa0774 0.24 -0.4 421,144 - SMa0774 0.25 -1.1 421,183 + SMa0774 0.28 +0.0 421,232 + SMa0774 0.31 -1.3 421,520 + SMa0774 0.48 -0.2 421,713 + SMa0774 0.60 -0.2 421,851 + SMa0774 0.68 +0.8 421,864 + SMa0774 0.69 -1.8 421,910 - SMa0774 0.72 -0.3 421,915 - SMa0774 0.72 +0.4 421,947 - SMa0774 0.74 -0.3 422,094 + SMa0774 0.83 -1.6 422,094 + SMa0774 0.83 -0.2 422,095 - SMa0774 0.83 -0.6 422,122 - SMa0774 0.84 -1.0 422,138 - SMa0774 0.85 -0.1 422,273 + +0.1 422,274 - -2.0 422,276 + -0.5 422,315 - +1.7 422,346 + +0.3 422,346 + -0.4 422,346 + -0.4 422,346 + -0.8 422,347 - -0.2 422,347 - +1.0 422,347 - -0.4 422,347 - -0.4 422,430 - -0.5 422,430 - -0.4 422,559 - -0.4 422,578 - +0.1 422,589 + -0.5 422,616 + +0.5 422,616 + -0.2 422,619 - -0.2 422,622 + +0.4 422,679 + +0.4 422,847 - SMa0775 0.43 -1.0 422,927 - SMa0775 0.67 -0.5 422,990 + SMa0775 0.86 -0.2 422,991 - SMa0775 0.87 +0.0 423,140 + -0.6 423,140 + -0.1 423,140 + -1.2 423,140 + -0.5 423,307 + -0.2
Or see this region's nucleotide sequence