Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21416 and SM_b21417 overlap by 4 nucleotides SM_b21417 and SM_b21418 are separated by 6 nucleotides
SM_b21416: SM_b21416 - glucose-1-phosphate cytidylyltransferase, at 1,345,948 to 1,346,715
_b21416
SM_b21417: SM_b21417 - CDP-glucose 4,6-dehydratase, at 1,346,712 to 1,347,782
_b21417
SM_b21418: SM_b21418 - NDP-hexose 3-C-methyltransferase, at 1,347,789 to 1,349,021
_b21418
Position (kb)
1346
1347
1348 Strain fitness (log2 ratio)
-1
0
1 at 1345.766 kb on + strand at 1345.766 kb on + strand at 1345.798 kb on + strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.927 kb on - strand at 1345.976 kb on - strand at 1346.019 kb on + strand at 1346.019 kb on + strand at 1346.020 kb on - strand at 1346.068 kb on + strand, within SM_b21416 at 1346.077 kb on + strand, within SM_b21416 at 1346.078 kb on - strand at 1346.097 kb on + strand, within SM_b21416 at 1346.098 kb on - strand, within SM_b21416 at 1346.119 kb on + strand, within SM_b21416 at 1346.120 kb on - strand, within SM_b21416 at 1346.134 kb on + strand, within SM_b21416 at 1346.135 kb on - strand, within SM_b21416 at 1346.146 kb on + strand, within SM_b21416 at 1346.146 kb on + strand, within SM_b21416 at 1346.146 kb on + strand, within SM_b21416 at 1346.147 kb on - strand, within SM_b21416 at 1346.200 kb on + strand, within SM_b21416 at 1346.201 kb on - strand, within SM_b21416 at 1346.321 kb on - strand, within SM_b21416 at 1346.422 kb on + strand, within SM_b21416 at 1346.423 kb on - strand, within SM_b21416 at 1346.423 kb on - strand, within SM_b21416 at 1346.464 kb on - strand, within SM_b21416 at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.836 kb on - strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.918 kb on - strand, within SM_b21417 at 1346.979 kb on - strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.010 kb on - strand, within SM_b21417 at 1347.010 kb on - strand, within SM_b21417 at 1347.127 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.248 kb on + strand, within SM_b21417 at 1347.249 kb on - strand, within SM_b21417 at 1347.249 kb on - strand, within SM_b21417 at 1347.429 kb on + strand, within SM_b21417 at 1347.705 kb on + strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.781 kb on - strand at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.050 kb on + strand, within SM_b21418 at 1348.138 kb on - strand, within SM_b21418 at 1348.380 kb on - strand, within SM_b21418 at 1348.380 kb on - strand, within SM_b21418 at 1348.437 kb on + strand, within SM_b21418 at 1348.449 kb on + strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.455 kb on + strand, within SM_b21418 at 1348.456 kb on - strand, within SM_b21418 at 1348.456 kb on - strand, within SM_b21418 at 1348.481 kb on + strand, within SM_b21418 at 1348.482 kb on - strand, within SM_b21418 at 1348.650 kb on + strand, within SM_b21418 at 1348.650 kb on + strand, within SM_b21418
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,345,766 + +0.6 1,345,766 + +0.1 1,345,798 + +0.1 1,345,801 - +0.6 1,345,801 - -1.4 1,345,801 - -0.1 1,345,801 - +0.5 1,345,801 - +0.6 1,345,927 - -0.6 1,345,976 - +0.0 1,346,019 + +0.8 1,346,019 + -0.1 1,346,020 - +0.0 1,346,068 + SM_b21416 0.16 +0.6 1,346,077 + SM_b21416 0.17 +0.1 1,346,078 - +0.9 1,346,097 + SM_b21416 0.19 +1.5 1,346,098 - SM_b21416 0.20 +0.3 1,346,119 + SM_b21416 0.22 +0.4 1,346,120 - SM_b21416 0.22 -0.9 1,346,134 + SM_b21416 0.24 +0.4 1,346,135 - SM_b21416 0.24 -0.1 1,346,146 + SM_b21416 0.26 -0.4 1,346,146 + SM_b21416 0.26 +0.5 1,346,146 + SM_b21416 0.26 +0.0 1,346,147 - SM_b21416 0.26 -0.0 1,346,200 + SM_b21416 0.33 -0.3 1,346,201 - SM_b21416 0.33 -0.1 1,346,321 - SM_b21416 0.49 +0.4 1,346,422 + SM_b21416 0.62 +1.3 1,346,423 - SM_b21416 0.62 +0.0 1,346,423 - SM_b21416 0.62 +0.2 1,346,464 - SM_b21416 0.67 +0.2 1,346,800 + +0.9 1,346,800 + -0.2 1,346,800 + +0.8 1,346,800 + -0.0 1,346,801 - -1.5 1,346,801 - -0.0 1,346,801 - +0.4 1,346,801 - +0.4 1,346,801 - +0.4 1,346,836 - SM_b21417 0.12 +0.3 1,346,917 + SM_b21417 0.19 +0.5 1,346,917 + SM_b21417 0.19 +0.2 1,346,917 + SM_b21417 0.19 +0.3 1,346,918 - SM_b21417 0.19 -0.1 1,346,979 - SM_b21417 0.25 +0.3 1,347,009 + SM_b21417 0.28 +0.1 1,347,009 + SM_b21417 0.28 +0.5 1,347,009 + SM_b21417 0.28 +0.5 1,347,010 - SM_b21417 0.28 +0.0 1,347,010 - SM_b21417 0.28 +0.6 1,347,127 - SM_b21417 0.39 +0.9 1,347,244 - SM_b21417 0.50 +0.2 1,347,244 - SM_b21417 0.50 +0.6 1,347,244 - SM_b21417 0.50 +1.6 1,347,248 + SM_b21417 0.50 +0.3 1,347,249 - SM_b21417 0.50 +0.4 1,347,249 - SM_b21417 0.50 +0.3 1,347,429 + SM_b21417 0.67 +0.2 1,347,705 + +0.4 1,347,758 - +0.1 1,347,758 - +0.4 1,347,758 - +0.0 1,347,758 - -0.8 1,347,781 - -0.5 1,348,005 + SM_b21418 0.18 -0.5 1,348,005 + SM_b21418 0.18 -0.1 1,348,005 + SM_b21418 0.18 +0.5 1,348,005 + SM_b21418 0.18 +0.1 1,348,005 + SM_b21418 0.18 +0.1 1,348,005 + SM_b21418 0.18 +0.2 1,348,006 - SM_b21418 0.18 +0.1 1,348,006 - SM_b21418 0.18 -0.5 1,348,006 - SM_b21418 0.18 +0.8 1,348,006 - SM_b21418 0.18 -0.1 1,348,050 + SM_b21418 0.21 +0.4 1,348,138 - SM_b21418 0.28 +0.2 1,348,380 - SM_b21418 0.48 -0.5 1,348,380 - SM_b21418 0.48 -0.9 1,348,437 + SM_b21418 0.53 +0.9 1,348,449 + SM_b21418 0.54 -0.2 1,348,450 - SM_b21418 0.54 +0.4 1,348,450 - SM_b21418 0.54 +0.4 1,348,450 - SM_b21418 0.54 +0.3 1,348,450 - SM_b21418 0.54 -0.1 1,348,455 + SM_b21418 0.54 +0.0 1,348,456 - SM_b21418 0.54 +0.7 1,348,456 - SM_b21418 0.54 -0.1 1,348,481 + SM_b21418 0.56 +0.0 1,348,482 - SM_b21418 0.56 +0.8 1,348,650 + SM_b21418 0.70 -0.0 1,348,650 + SM_b21418 0.70 -0.3
Or see this region's nucleotide sequence