Strain Fitness in Sinorhizobium meliloti 1021 around SMa1666

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1664 and SMa1666 are separated by 336 nucleotidesSMa1666 and SMa1667 are separated by 289 nucleotides SMa1664: SMa1664 - HlyD-family protein, at 931,023 to 932,189 SMa1664 SMa1666: SMa1666 - hypothetical protein, at 932,526 to 933,005 SMa1666 SMa1667: SMa1667 - ArcD1 arginine/ornithine antiporter, at 933,295 to 934,722 SMa1667 Position (kb) 932 933 934Strain fitness (log2 ratio) -1 0 1at 931.645 kb on + strand, within SMa1664at 931.694 kb on - strand, within SMa1664at 931.907 kb on - strand, within SMa1664at 931.907 kb on - strand, within SMa1664at 932.058 kb on + strand, within SMa1664at 932.058 kb on + strand, within SMa1664at 932.058 kb on + strand, within SMa1664at 932.333 kb on + strandat 932.334 kb on - strandat 932.334 kb on - strandat 932.334 kb on - strandat 932.370 kb on - strandat 932.382 kb on + strandat 932.383 kb on - strandat 932.383 kb on - strandat 932.747 kb on + strand, within SMa1666at 932.811 kb on + strand, within SMa1666at 932.811 kb on + strand, within SMa1666at 932.812 kb on - strand, within SMa1666at 932.812 kb on - strand, within SMa1666at 932.988 kb on + strandat 932.989 kb on - strandat 933.102 kb on + strandat 933.103 kb on - strandat 933.154 kb on + strandat 933.154 kb on + strandat 933.155 kb on - strandat 933.231 kb on + strandat 933.248 kb on + strandat 933.249 kb on - strandat 933.574 kb on + strand, within SMa1667at 933.607 kb on + strand, within SMa1667at 933.607 kb on + strand, within SMa1667at 933.791 kb on + strand, within SMa1667at 933.791 kb on + strand, within SMa1667at 933.792 kb on - strand, within SMa1667at 933.800 kb on + strand, within SMa1667at 933.801 kb on - strand, within SMa1667at 933.893 kb on + strand, within SMa1667at 933.935 kb on + strand, within SMa1667

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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931,645 + SMa1664 0.53 -0.2
931,694 - SMa1664 0.57 +0.4
931,907 - SMa1664 0.76 -0.3
931,907 - SMa1664 0.76 -0.5
932,058 + SMa1664 0.89 -0.1
932,058 + SMa1664 0.89 -0.7
932,058 + SMa1664 0.89 -0.2
932,333 + +0.1
932,334 - -0.2
932,334 - -0.7
932,334 - -0.0
932,370 - -0.9
932,382 + -0.0
932,383 - -0.5
932,383 - +0.1
932,747 + SMa1666 0.46 -1.2
932,811 + SMa1666 0.59 +0.3
932,811 + SMa1666 0.59 -1.0
932,812 - SMa1666 0.60 -1.2
932,812 - SMa1666 0.60 -0.4
932,988 + -0.1
932,989 - -0.0
933,102 + +0.5
933,103 - +0.1
933,154 + +0.5
933,154 + +1.0
933,155 - -0.3
933,231 + -0.6
933,248 + -0.6
933,249 - -0.3
933,574 + SMa1667 0.20 -0.5
933,607 + SMa1667 0.22 +1.3
933,607 + SMa1667 0.22 +0.6
933,791 + SMa1667 0.35 -0.0
933,791 + SMa1667 0.35 -0.2
933,792 - SMa1667 0.35 -0.3
933,800 + SMa1667 0.35 +0.2
933,801 - SMa1667 0.35 +0.0
933,893 + SMa1667 0.42 -0.7
933,935 + SMa1667 0.45 -0.6

Or see this region's nucleotide sequence