Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0992 and SMa5007 are separated by 56 nucleotides SMa5007 and SMa0995 are separated by 524 nucleotides SMa0995 and SMa0997 are separated by 714 nucleotides
SMa0992: SMa0992 - hypothetical protein, at 549,895 to 550,287
SMa0992
SMa5007: SMa5007 - transcriptional regulator, at 550,344 to 550,724
SMa5007
SMa0995: SMa0995 - TRm5 transposase, at 551,249 to 552,481
SMa0995
SMa0997: SMa0997 - transposase, fragment, at 553,196 to 553,492
SMa0997
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.281 kb on + strand at 550.282 kb on - strand at 550.285 kb on + strand at 550.286 kb on - strand at 550.286 kb on - strand at 550.286 kb on - strand at 550.295 kb on + strand at 550.296 kb on - strand at 550.339 kb on - strand at 550.398 kb on + strand, within SMa5007 at 550.398 kb on + strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.498 kb on + strand, within SMa5007 at 550.558 kb on + strand, within SMa5007 at 550.843 kb on - strand at 550.901 kb on - strand at 550.901 kb on - strand at 550.922 kb on - strand at 550.957 kb on - strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.172 kb on - strand at 551.440 kb on - strand, within SMa0995 at 551.440 kb on - strand, within SMa0995 at 552.157 kb on - strand, within SMa0995 at 552.613 kb on + strand at 552.614 kb on - strand at 552.614 kb on - strand at 552.720 kb on + strand at 552.767 kb on - strand at 552.809 kb on - strand at 552.816 kb on + strand at 552.816 kb on + strand at 552.822 kb on + strand at 552.823 kb on - strand at 552.832 kb on + strand at 552.832 kb on + strand at 552.845 kb on - strand at 552.845 kb on - strand at 552.870 kb on + strand at 552.871 kb on - strand at 552.871 kb on - strand at 553.061 kb on + strand at 553.062 kb on - strand at 553.444 kb on + strand, within SMa0997
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 550,281 + -0.9 550,282 - +0.1 550,285 + -0.7 550,286 - -0.1 550,286 - +0.2 550,286 - -0.3 550,295 + -1.3 550,296 - +2.2 550,339 - -0.1 550,398 + SMa5007 0.14 -2.1 550,398 + SMa5007 0.14 -3.5 550,399 - SMa5007 0.14 +0.8 550,399 - SMa5007 0.14 -0.9 550,399 - SMa5007 0.14 +0.0 550,399 - SMa5007 0.14 -0.0 550,498 + SMa5007 0.40 +0.2 550,558 + SMa5007 0.56 -1.4 550,843 - +0.1 550,901 - -0.3 550,901 - -0.2 550,922 - -0.1 550,957 - +0.7 551,012 - -0.0 551,012 - +1.0 551,012 - -0.7 551,012 - -0.6 551,172 - -0.0 551,440 - SMa0995 0.15 -1.0 551,440 - SMa0995 0.15 -0.6 552,157 - SMa0995 0.74 +0.4 552,613 + +0.1 552,614 - +1.1 552,614 - +0.5 552,720 + +0.2 552,767 - +0.2 552,809 - +0.4 552,816 + +0.5 552,816 + -0.1 552,822 + -0.1 552,823 - +0.5 552,832 + +0.7 552,832 + +0.9 552,845 - -0.5 552,845 - +0.1 552,870 + +0.2 552,871 - -0.2 552,871 - +0.6 553,061 + +0.1 553,062 - +0.5 553,444 + SMa0997 0.84 +0.7
Or see this region's nucleotide sequence