Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21289 and SM_b21290 overlap by 11 nucleotides SM_b21290 and SM_b21291 are separated by 11 nucleotides SM_b21291 and SM_b21292 are separated by 149 nucleotides
SM_b21289: SM_b21289 - protein, may interact with ubiquitin, at 865,575 to 866,078
_b21289
SM_b21290: SM_b21290 - NADPH quinone oxidoreductase, at 866,068 to 867,048
_b21290
SM_b21291: SM_b21291 - LysR family transcriptional regulator, at 867,060 to 868,007
_b21291
SM_b21292: SM_b21292 - membrane protein, at 868,157 to 869,395
_b21292
Position (kb) 867
868
869 Strain fitness (log2 ratio) -1
0
1 at 866.067 kb on + strand at 866.067 kb on + strand at 866.068 kb on - strand at 866.130 kb on + strand at 866.189 kb on - strand, within SM_b21290 at 866.189 kb on - strand, within SM_b21290 at 866.277 kb on - strand, within SM_b21290 at 866.363 kb on - strand, within SM_b21290 at 866.371 kb on + strand, within SM_b21290 at 866.372 kb on - strand, within SM_b21290 at 866.375 kb on + strand, within SM_b21290 at 866.375 kb on + strand, within SM_b21290 at 866.376 kb on - strand, within SM_b21290 at 866.399 kb on + strand, within SM_b21290 at 866.650 kb on + strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.651 kb on - strand, within SM_b21290 at 866.718 kb on - strand, within SM_b21290 at 866.825 kb on + strand, within SM_b21290 at 866.870 kb on + strand, within SM_b21290 at 867.028 kb on - strand at 867.257 kb on + strand, within SM_b21291 at 867.258 kb on - strand, within SM_b21291 at 867.400 kb on + strand, within SM_b21291 at 867.400 kb on + strand, within SM_b21291 at 867.400 kb on + strand, within SM_b21291 at 867.401 kb on - strand, within SM_b21291 at 867.403 kb on + strand, within SM_b21291 at 867.421 kb on + strand, within SM_b21291 at 867.568 kb on - strand, within SM_b21291 at 867.617 kb on + strand, within SM_b21291 at 867.618 kb on - strand, within SM_b21291 at 867.618 kb on - strand, within SM_b21291 at 867.675 kb on + strand, within SM_b21291 at 867.812 kb on - strand, within SM_b21291 at 867.878 kb on + strand, within SM_b21291 at 868.038 kb on + strand at 868.126 kb on + strand at 868.126 kb on + strand at 868.127 kb on - strand at 868.160 kb on + strand at 868.160 kb on + strand at 868.160 kb on + strand at 868.161 kb on - strand at 868.161 kb on - strand at 868.161 kb on - strand at 868.343 kb on + strand, within SM_b21292 at 868.343 kb on + strand, within SM_b21292 at 868.343 kb on + strand, within SM_b21292 at 868.343 kb on + strand, within SM_b21292 at 868.344 kb on - strand, within SM_b21292 at 868.344 kb on - strand, within SM_b21292 at 868.344 kb on - strand, within SM_b21292 at 868.415 kb on + strand, within SM_b21292 at 868.458 kb on - strand, within SM_b21292 at 868.458 kb on - strand, within SM_b21292 at 868.478 kb on + strand, within SM_b21292 at 868.478 kb on + strand, within SM_b21292 at 868.479 kb on - strand, within SM_b21292 at 868.603 kb on + strand, within SM_b21292 at 868.625 kb on + strand, within SM_b21292 at 868.626 kb on - strand, within SM_b21292 at 868.626 kb on - strand, within SM_b21292 at 868.685 kb on + strand, within SM_b21292 at 868.845 kb on - strand, within SM_b21292 at 868.910 kb on + strand, within SM_b21292 at 868.911 kb on - strand, within SM_b21292 at 868.911 kb on - strand, within SM_b21292 at 868.912 kb on + strand, within SM_b21292 at 868.913 kb on - strand, within SM_b21292
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 866,067 + +0.5 866,067 + -1.3 866,068 - +0.0 866,130 + +0.1 866,189 - SM_b21290 0.12 +0.6 866,189 - SM_b21290 0.12 +0.3 866,277 - SM_b21290 0.21 -0.7 866,363 - SM_b21290 0.30 -0.1 866,371 + SM_b21290 0.31 -0.9 866,372 - SM_b21290 0.31 -0.4 866,375 + SM_b21290 0.31 -1.3 866,375 + SM_b21290 0.31 +0.0 866,376 - SM_b21290 0.31 +0.4 866,399 + SM_b21290 0.34 -0.0 866,650 + SM_b21290 0.59 -0.7 866,651 - SM_b21290 0.59 -0.1 866,651 - SM_b21290 0.59 +1.0 866,651 - SM_b21290 0.59 -0.0 866,651 - SM_b21290 0.59 -0.1 866,718 - SM_b21290 0.66 -0.4 866,825 + SM_b21290 0.77 -0.5 866,870 + SM_b21290 0.82 +1.0 867,028 - +0.2 867,257 + SM_b21291 0.21 +0.3 867,258 - SM_b21291 0.21 -0.1 867,400 + SM_b21291 0.36 +0.8 867,400 + SM_b21291 0.36 -0.8 867,400 + SM_b21291 0.36 +0.7 867,401 - SM_b21291 0.36 -0.3 867,403 + SM_b21291 0.36 -0.3 867,421 + SM_b21291 0.38 +0.2 867,568 - SM_b21291 0.54 +0.4 867,617 + SM_b21291 0.59 -0.4 867,618 - SM_b21291 0.59 +0.1 867,618 - SM_b21291 0.59 +0.7 867,675 + SM_b21291 0.65 +1.1 867,812 - SM_b21291 0.79 +0.5 867,878 + SM_b21291 0.86 -0.0 868,038 + -0.4 868,126 + +0.8 868,126 + -0.6 868,127 - +0.2 868,160 + +1.5 868,160 + -0.4 868,160 + +0.2 868,161 - -0.4 868,161 - +0.7 868,161 - -0.8 868,343 + SM_b21292 0.15 -0.1 868,343 + SM_b21292 0.15 -1.0 868,343 + SM_b21292 0.15 -0.3 868,343 + SM_b21292 0.15 +0.9 868,344 - SM_b21292 0.15 -0.4 868,344 - SM_b21292 0.15 -0.4 868,344 - SM_b21292 0.15 -0.4 868,415 + SM_b21292 0.21 +0.3 868,458 - SM_b21292 0.24 -0.1 868,458 - SM_b21292 0.24 +0.6 868,478 + SM_b21292 0.26 -0.6 868,478 + SM_b21292 0.26 -1.0 868,479 - SM_b21292 0.26 -0.3 868,603 + SM_b21292 0.36 -0.7 868,625 + SM_b21292 0.38 -0.4 868,626 - SM_b21292 0.38 -0.8 868,626 - SM_b21292 0.38 -0.7 868,685 + SM_b21292 0.43 +1.1 868,845 - SM_b21292 0.56 -0.2 868,910 + SM_b21292 0.61 +0.3 868,911 - SM_b21292 0.61 +0.9 868,911 - SM_b21292 0.61 +0.5 868,912 + SM_b21292 0.61 -0.3 868,913 - SM_b21292 0.61 +0.9
Or see this region's nucleotide sequence