Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20975

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20973 and SM_b20974 are separated by 13 nucleotidesSM_b20974 and SM_b20975 are separated by 25 nucleotidesSM_b20975 and SM_b20976 are separated by 73 nucleotidesSM_b20976 and SM_b20977 are separated by 30 nucleotides SM_b20973: SM_b20973 - hypothetical protein, at 1,203,418 to 1,206,444 _b20973 SM_b20974: SM_b20974 - oxidoreductase, at 1,206,458 to 1,207,126 _b20974 SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801 _b20975 SM_b20976: SM_b20976 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,208,875 to 1,209,621 _b20976 SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719 _b20977 Position (kb) 1207 1208 1209Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1206.377 kb on + strandat 1206.525 kb on - strandat 1206.525 kb on - strand, within SM_b20974at 1206.525 kb on - strand, within SM_b20974at 1206.587 kb on - strand, within SM_b20974at 1206.696 kb on + strand, within SM_b20974at 1206.696 kb on + strand, within SM_b20974at 1206.697 kb on - strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.703 kb on - strand, within SM_b20974at 1206.703 kb on - strand, within SM_b20974at 1206.703 kb on - strand, within SM_b20974at 1206.992 kb on + strand, within SM_b20974at 1207.074 kb on + strandat 1207.074 kb on + strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.171 kb on + strandat 1207.172 kb on - strandat 1207.182 kb on + strandat 1207.182 kb on + strandat 1207.183 kb on - strandat 1207.183 kb on - strandat 1207.183 kb on - strandat 1207.225 kb on + strandat 1207.225 kb on + strandat 1207.225 kb on + strandat 1207.244 kb on + strandat 1207.244 kb on + strandat 1207.244 kb on + strandat 1207.245 kb on - strandat 1207.247 kb on - strandat 1207.508 kb on - strand, within SM_b20975at 1207.508 kb on - strand, within SM_b20975at 1207.508 kb on - strand, within SM_b20975at 1207.516 kb on + strand, within SM_b20975at 1207.517 kb on - strand, within SM_b20975at 1207.615 kb on + strand, within SM_b20975at 1207.616 kb on - strand, within SM_b20975at 1207.616 kb on - strand, within SM_b20975at 1207.620 kb on + strand, within SM_b20975at 1207.620 kb on + strand, within SM_b20975at 1207.620 kb on + strand, within SM_b20975at 1207.621 kb on - strand, within SM_b20975at 1207.621 kb on - strand, within SM_b20975at 1207.621 kb on - strand, within SM_b20975at 1207.703 kb on - strand, within SM_b20975at 1207.703 kb on - strand, within SM_b20975at 1207.957 kb on - strand, within SM_b20975at 1207.957 kb on - strand, within SM_b20975at 1207.957 kb on - strand, within SM_b20975at 1208.020 kb on + strand, within SM_b20975at 1208.021 kb on - strand, within SM_b20975at 1208.021 kb on - strand, within SM_b20975at 1208.111 kb on - strand, within SM_b20975at 1208.111 kb on - strand, within SM_b20975at 1208.164 kb on + strand, within SM_b20975at 1208.432 kb on + strand, within SM_b20975at 1208.433 kb on - strand, within SM_b20975at 1208.498 kb on - strand, within SM_b20975at 1208.498 kb on - strand, within SM_b20975at 1208.734 kb on + strandat 1208.735 kb on - strandat 1208.735 kb on - strandat 1208.735 kb on - strandat 1208.876 kb on + strandat 1208.876 kb on + strandat 1208.877 kb on - strandat 1209.137 kb on + strand, within SM_b20976at 1209.271 kb on + strand, within SM_b20976at 1209.271 kb on + strand, within SM_b20976at 1209.293 kb on + strand, within SM_b20976at 1209.294 kb on - strand, within SM_b20976at 1209.294 kb on - strand, within SM_b20976at 1209.294 kb on - strand, within SM_b20976at 1209.461 kb on - strand, within SM_b20976at 1209.538 kb on - strand, within SM_b20976at 1209.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,206,377 + +0.4
1,206,525 - -1.3
1,206,525 - SM_b20974 0.10 +0.2
1,206,525 - SM_b20974 0.10 +0.4
1,206,587 - SM_b20974 0.19 +0.3
1,206,696 + SM_b20974 0.36 -0.6
1,206,696 + SM_b20974 0.36 +1.5
1,206,697 - SM_b20974 0.36 -0.8
1,206,702 + SM_b20974 0.36 +0.1
1,206,702 + SM_b20974 0.36 -0.0
1,206,702 + SM_b20974 0.36 +0.2
1,206,702 + SM_b20974 0.36 +0.3
1,206,703 - SM_b20974 0.37 +0.2
1,206,703 - SM_b20974 0.37 +0.1
1,206,703 - SM_b20974 0.37 +1.1
1,206,992 + SM_b20974 0.80 +0.2
1,207,074 + +0.1
1,207,074 + -1.0
1,207,075 - +0.2
1,207,075 - -0.2
1,207,075 - -0.1
1,207,075 - +0.2
1,207,075 - -0.3
1,207,075 - -0.2
1,207,171 + -0.2
1,207,172 - +0.8
1,207,182 + -1.0
1,207,182 + -0.1
1,207,183 - -1.0
1,207,183 - -0.7
1,207,183 - -0.0
1,207,225 + -0.0
1,207,225 + +0.2
1,207,225 + +0.4
1,207,244 + +0.1
1,207,244 + +0.0
1,207,244 + +0.0
1,207,245 - -0.2
1,207,247 - +0.5
1,207,508 - SM_b20975 0.22 -1.0
1,207,508 - SM_b20975 0.22 -1.2
1,207,508 - SM_b20975 0.22 +1.0
1,207,516 + SM_b20975 0.22 +0.2
1,207,517 - SM_b20975 0.22 -0.5
1,207,615 + SM_b20975 0.28 -0.2
1,207,616 - SM_b20975 0.28 -0.5
1,207,616 - SM_b20975 0.28 -0.0
1,207,620 + SM_b20975 0.28 +1.0
1,207,620 + SM_b20975 0.28 -0.1
1,207,620 + SM_b20975 0.28 -0.8
1,207,621 - SM_b20975 0.28 +1.3
1,207,621 - SM_b20975 0.28 -0.0
1,207,621 - SM_b20975 0.28 +0.3
1,207,703 - SM_b20975 0.33 -0.5
1,207,703 - SM_b20975 0.33 +3.1
1,207,957 - SM_b20975 0.49 +0.7
1,207,957 - SM_b20975 0.49 +0.3
1,207,957 - SM_b20975 0.49 +1.0
1,208,020 + SM_b20975 0.53 +0.3
1,208,021 - SM_b20975 0.53 +0.7
1,208,021 - SM_b20975 0.53 +0.5
1,208,111 - SM_b20975 0.58 +0.4
1,208,111 - SM_b20975 0.58 -0.3
1,208,164 + SM_b20975 0.61 +0.5
1,208,432 + SM_b20975 0.78 +1.0
1,208,433 - SM_b20975 0.78 -2.5
1,208,498 - SM_b20975 0.82 +0.3
1,208,498 - SM_b20975 0.82 -0.2
1,208,734 + +1.3
1,208,735 - +1.5
1,208,735 - +0.6
1,208,735 - -0.0
1,208,876 + -1.4
1,208,876 + +0.1
1,208,877 - -0.0
1,209,137 + SM_b20976 0.35 -0.0
1,209,271 + SM_b20976 0.53 -2.2
1,209,271 + SM_b20976 0.53 -0.7
1,209,293 + SM_b20976 0.56 -0.3
1,209,294 - SM_b20976 0.56 -0.0
1,209,294 - SM_b20976 0.56 +0.7
1,209,294 - SM_b20976 0.56 +0.1
1,209,461 - SM_b20976 0.78 +0.6
1,209,538 - SM_b20976 0.89 +0.5
1,209,667 + -0.6

Or see this region's nucleotide sequence