Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20813 and SM_b20814 are separated by 337 nucleotides SM_b20814 and SM_b20815 are separated by 50 nucleotides
SM_b20813: SM_b20813 - lipid ABC transporter permease/ATP-binding protein, at 599,852 to 601,657
_b20813
SM_b20814: SM_b20814 - hypothetical protein, at 601,995 to 602,735
_b20814
SM_b20815: SM_b20815 - outer membrane protein assembly protein, at 602,786 to 604,453
_b20815
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1 at 601.055 kb on + strand, within SM_b20813 at 601.098 kb on + strand, within SM_b20813 at 601.098 kb on + strand, within SM_b20813 at 601.099 kb on - strand, within SM_b20813 at 601.108 kb on + strand, within SM_b20813 at 601.109 kb on - strand, within SM_b20813 at 601.139 kb on + strand, within SM_b20813 at 601.139 kb on + strand, within SM_b20813 at 601.157 kb on + strand, within SM_b20813 at 601.157 kb on + strand, within SM_b20813 at 601.158 kb on - strand, within SM_b20813 at 601.158 kb on - strand, within SM_b20813 at 601.193 kb on + strand, within SM_b20813 at 601.264 kb on - strand, within SM_b20813 at 601.288 kb on + strand, within SM_b20813 at 601.288 kb on + strand at 601.289 kb on - strand, within SM_b20813 at 601.289 kb on - strand, within SM_b20813 at 601.375 kb on + strand, within SM_b20813 at 601.396 kb on + strand, within SM_b20813 at 601.504 kb on + strand at 601.592 kb on + strand at 601.593 kb on - strand at 601.639 kb on - strand at 601.639 kb on - strand at 601.655 kb on + strand at 601.655 kb on + strand at 601.655 kb on + strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.756 kb on + strand at 601.763 kb on + strand at 601.839 kb on + strand at 601.840 kb on - strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.899 kb on - strand at 601.899 kb on - strand at 602.000 kb on + strand at 602.000 kb on + strand at 602.001 kb on - strand at 602.001 kb on - strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.016 kb on - strand at 602.165 kb on + strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.189 kb on + strand, within SM_b20814 at 602.332 kb on - strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.496 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.561 kb on - strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.570 kb on - strand, within SM_b20814 at 602.652 kb on + strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814 at 602.718 kb on + strand at 602.718 kb on + strand at 602.718 kb on + strand at 602.734 kb on - strand at 602.739 kb on + strand at 602.916 kb on - strand at 603.008 kb on + strand, within SM_b20815 at 603.172 kb on - strand, within SM_b20815 at 603.525 kb on - strand, within SM_b20815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 601,055 + SM_b20813 0.67 -0.4 601,098 + SM_b20813 0.69 -0.8 601,098 + SM_b20813 0.69 -0.6 601,099 - SM_b20813 0.69 -0.5 601,108 + SM_b20813 0.70 +0.1 601,109 - SM_b20813 0.70 -0.2 601,139 + SM_b20813 0.71 -1.6 601,139 + SM_b20813 0.71 +0.0 601,157 + SM_b20813 0.72 -0.0 601,157 + SM_b20813 0.72 -0.4 601,158 - SM_b20813 0.72 -0.8 601,158 - SM_b20813 0.72 -0.1 601,193 + SM_b20813 0.74 -0.2 601,264 - SM_b20813 0.78 -0.9 601,288 + SM_b20813 0.80 +0.3 601,288 + +0.8 601,289 - SM_b20813 0.80 -0.2 601,289 - SM_b20813 0.80 +0.6 601,375 + SM_b20813 0.84 -0.5 601,396 + SM_b20813 0.85 +1.4 601,504 + +0.4 601,592 + -0.3 601,593 - +0.1 601,639 - +0.5 601,639 - -0.1 601,655 + +0.4 601,655 + -0.4 601,655 + +1.0 601,656 - -0.1 601,656 - -0.8 601,656 - -0.4 601,656 - +0.6 601,656 - +0.6 601,656 - -0.7 601,756 + -1.0 601,763 + +1.0 601,839 + +0.4 601,840 - -1.3 601,898 + +0.8 601,898 + +0.6 601,898 + +0.2 601,899 - -2.1 601,899 - -1.2 602,000 + -1.5 602,000 + -1.6 602,001 - -0.6 602,001 - -1.1 602,002 + -2.2 602,002 + -0.9 602,002 + -1.9 602,016 - -2.2 602,165 + SM_b20814 0.23 -2.1 602,166 - SM_b20814 0.23 -1.1 602,166 - SM_b20814 0.23 -0.2 602,166 - SM_b20814 0.23 -1.4 602,166 - SM_b20814 0.23 -1.1 602,166 - SM_b20814 0.23 -1.5 602,189 + SM_b20814 0.26 -1.6 602,332 - SM_b20814 0.45 -2.6 602,471 + SM_b20814 0.64 -1.0 602,471 + SM_b20814 0.64 -2.2 602,496 + SM_b20814 0.68 -0.9 602,560 + SM_b20814 0.76 -1.2 602,560 + SM_b20814 0.76 -0.4 602,561 - SM_b20814 0.76 -0.7 602,569 + SM_b20814 0.77 -1.0 602,569 + SM_b20814 0.77 -1.1 602,570 - SM_b20814 0.78 -1.4 602,652 + SM_b20814 0.89 -0.7 602,656 - SM_b20814 0.89 +0.3 602,656 - SM_b20814 0.89 -1.6 602,718 + -2.3 602,718 + -0.2 602,718 + -2.7 602,734 - +1.6 602,739 + -0.1 602,916 - -1.1 603,008 + SM_b20815 0.13 -0.3 603,172 - SM_b20815 0.23 -0.4 603,525 - SM_b20815 0.44 +0.4
Or see this region's nucleotide sequence