Strain Fitness in Sinorhizobium meliloti 1021 around SMc04143

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04144 and SMc04143 are separated by 77 nucleotidesSMc04143 and SMc04142 are separated by 274 nucleotides SMc04144: SMc04144 - dihydroxy-acid dehydratase, at 127,138 to 128,862 SMc04144 SMc04143: SMc04143 - transcriptional regulator, at 128,940 to 129,662 SMc04143 SMc04142: SMc04142 - hypothetical protein, at 129,937 to 130,821 SMc04142 Position (kb) 128 129 130Strain fitness (log2 ratio) -1 0 1at 128.352 kb on - strand, within SMc04144at 128.393 kb on + strand, within SMc04144at 128.394 kb on - strand, within SMc04144at 128.588 kb on + strand, within SMc04144at 128.588 kb on + strand, within SMc04144at 128.589 kb on - strand, within SMc04144at 128.589 kb on - strand, within SMc04144at 128.712 kb on + strandat 128.760 kb on - strandat 128.760 kb on - strandat 128.771 kb on + strandat 128.772 kb on - strandat 128.950 kb on + strandat 128.950 kb on + strandat 128.951 kb on - strandat 128.951 kb on - strandat 128.951 kb on - strandat 128.951 kb on - strandat 129.000 kb on + strandat 129.000 kb on + strandat 129.001 kb on - strandat 129.072 kb on - strand, within SMc04143at 129.161 kb on + strand, within SMc04143at 129.234 kb on + strand, within SMc04143at 129.235 kb on - strand, within SMc04143at 129.317 kb on - strand, within SMc04143at 129.558 kb on + strand, within SMc04143at 129.558 kb on + strand, within SMc04143at 129.559 kb on - strand, within SMc04143at 129.559 kb on - strand, within SMc04143at 129.559 kb on - strand, within SMc04143at 129.610 kb on - strandat 129.882 kb on + strandat 129.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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128,352 - SMc04144 0.70 +0.1
128,393 + SMc04144 0.73 +0.1
128,394 - SMc04144 0.73 -0.6
128,588 + SMc04144 0.84 -0.7
128,588 + SMc04144 0.84 +0.1
128,589 - SMc04144 0.84 +0.7
128,589 - SMc04144 0.84 -0.3
128,712 + +1.6
128,760 - +1.1
128,760 - -0.4
128,771 + +0.0
128,772 - -0.1
128,950 + -0.2
128,950 + -0.3
128,951 - -0.1
128,951 - -1.4
128,951 - -0.2
128,951 - +0.8
129,000 + -0.1
129,000 + -0.2
129,001 - +0.2
129,072 - SMc04143 0.18 -1.7
129,161 + SMc04143 0.31 +1.3
129,234 + SMc04143 0.41 -0.8
129,235 - SMc04143 0.41 +1.4
129,317 - SMc04143 0.52 -0.2
129,558 + SMc04143 0.85 -1.2
129,558 + SMc04143 0.85 -1.1
129,559 - SMc04143 0.86 +0.2
129,559 - SMc04143 0.86 +0.0
129,559 - SMc04143 0.86 -0.5
129,610 - -0.1
129,882 + +0.8
129,895 - -0.5

Or see this region's nucleotide sequence