Strain Fitness in Sinorhizobium meliloti 1021 around SMc04134

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04135 and SMc04134 are separated by 194 nucleotidesSMc04134 and SMc04133 are separated by 122 nucleotides SMc04135: SMc04135 - periplasmic binding ABC transporter protein, at 136,542 to 137,825 SMc04135 SMc04134: SMc04134 - transcriptional regulator, at 138,020 to 138,697 SMc04134 SMc04133: SMc04133 - oxidoreductase, at 138,820 to 139,968 SMc04133 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 137.068 kb on + strand, within SMc04135at 137.068 kb on + strand, within SMc04135at 137.068 kb on + strand, within SMc04135at 137.120 kb on - strand, within SMc04135at 137.260 kb on + strand, within SMc04135at 137.260 kb on + strand, within SMc04135at 137.261 kb on - strand, within SMc04135at 137.528 kb on - strand, within SMc04135at 137.528 kb on - strand, within SMc04135at 137.540 kb on - strand, within SMc04135at 137.540 kb on - strand, within SMc04135at 137.796 kb on + strandat 137.942 kb on - strandat 138.156 kb on + strand, within SMc04134at 138.222 kb on - strand, within SMc04134at 138.269 kb on + strand, within SMc04134at 138.269 kb on + strand, within SMc04134at 138.472 kb on - strand, within SMc04134at 138.548 kb on + strand, within SMc04134at 138.572 kb on + strand, within SMc04134at 138.594 kb on - strand, within SMc04134at 138.761 kb on + strandat 138.836 kb on + strandat 138.839 kb on + strandat 138.839 kb on + strandat 138.839 kb on + strandat 138.839 kb on + strandat 138.840 kb on - strandat 138.840 kb on - strandat 138.840 kb on - strandat 138.840 kb on - strandat 138.840 kb on - strandat 139.011 kb on + strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.142 kb on - strand, within SMc04133at 139.436 kb on - strand, within SMc04133at 139.436 kb on - strand, within SMc04133at 139.529 kb on - strand, within SMc04133at 139.593 kb on + strand, within SMc04133at 139.594 kb on - strand, within SMc04133

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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137,068 + SMc04135 0.41 -0.7
137,068 + SMc04135 0.41 -0.2
137,068 + SMc04135 0.41 -0.5
137,120 - SMc04135 0.45 -0.3
137,260 + SMc04135 0.56 -0.5
137,260 + SMc04135 0.56 +0.9
137,261 - SMc04135 0.56 +0.4
137,528 - SMc04135 0.77 +0.6
137,528 - SMc04135 0.77 -0.4
137,540 - SMc04135 0.78 +0.0
137,540 - SMc04135 0.78 +1.9
137,796 + -0.5
137,942 - +1.5
138,156 + SMc04134 0.20 -0.6
138,222 - SMc04134 0.30 -0.6
138,269 + SMc04134 0.37 -1.8
138,269 + SMc04134 0.37 +0.5
138,472 - SMc04134 0.67 -0.3
138,548 + SMc04134 0.78 -1.1
138,572 + SMc04134 0.81 -1.7
138,594 - SMc04134 0.85 -0.9
138,761 + -0.2
138,836 + +0.2
138,839 + -0.2
138,839 + +0.1
138,839 + -0.2
138,839 + -0.1
138,840 - -1.6
138,840 - +0.2
138,840 - -0.3
138,840 - -1.6
138,840 - -0.4
139,011 + SMc04133 0.17 -0.3
139,012 - SMc04133 0.17 +0.9
139,012 - SMc04133 0.17 -0.6
139,012 - SMc04133 0.17 +0.1
139,142 - SMc04133 0.28 +1.3
139,436 - SMc04133 0.54 +0.0
139,436 - SMc04133 0.54 -1.0
139,529 - SMc04133 0.62 +0.9
139,593 + SMc04133 0.67 -0.1
139,594 - SMc04133 0.67 +0.1

Or see this region's nucleotide sequence