Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04135 and SMc04134 are separated by 194 nucleotides SMc04134 and SMc04133 are separated by 122 nucleotides
SMc04135: SMc04135 - periplasmic binding ABC transporter protein, at 136,542 to 137,825
SMc04135
SMc04134: SMc04134 - transcriptional regulator, at 138,020 to 138,697
SMc04134
SMc04133: SMc04133 - oxidoreductase, at 138,820 to 139,968
SMc04133
Position (kb)
138
139 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.120 kb on - strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.261 kb on - strand, within SMc04135 at 137.528 kb on - strand, within SMc04135 at 137.528 kb on - strand, within SMc04135 at 137.540 kb on - strand, within SMc04135 at 137.540 kb on - strand, within SMc04135 at 137.796 kb on + strand at 137.942 kb on - strand at 138.156 kb on + strand, within SMc04134 at 138.222 kb on - strand, within SMc04134 at 138.269 kb on + strand, within SMc04134 at 138.269 kb on + strand, within SMc04134 at 138.472 kb on - strand, within SMc04134 at 138.548 kb on + strand, within SMc04134 at 138.572 kb on + strand, within SMc04134 at 138.594 kb on - strand, within SMc04134 at 138.761 kb on + strand at 138.836 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 139.011 kb on + strand, within SMc04133 at 139.012 kb on - strand, within SMc04133 at 139.012 kb on - strand, within SMc04133 at 139.012 kb on - strand, within SMc04133 at 139.142 kb on - strand, within SMc04133 at 139.436 kb on - strand, within SMc04133 at 139.436 kb on - strand, within SMc04133 at 139.529 kb on - strand, within SMc04133 at 139.593 kb on + strand, within SMc04133 at 139.594 kb on - strand, within SMc04133
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 137,068 + SMc04135 0.41 -0.7 137,068 + SMc04135 0.41 -0.2 137,068 + SMc04135 0.41 -0.5 137,120 - SMc04135 0.45 -0.3 137,260 + SMc04135 0.56 -0.5 137,260 + SMc04135 0.56 +0.9 137,261 - SMc04135 0.56 +0.4 137,528 - SMc04135 0.77 +0.6 137,528 - SMc04135 0.77 -0.4 137,540 - SMc04135 0.78 +0.0 137,540 - SMc04135 0.78 +1.9 137,796 + -0.5 137,942 - +1.5 138,156 + SMc04134 0.20 -0.6 138,222 - SMc04134 0.30 -0.6 138,269 + SMc04134 0.37 -1.8 138,269 + SMc04134 0.37 +0.5 138,472 - SMc04134 0.67 -0.3 138,548 + SMc04134 0.78 -1.1 138,572 + SMc04134 0.81 -1.7 138,594 - SMc04134 0.85 -0.9 138,761 + -0.2 138,836 + +0.2 138,839 + -0.2 138,839 + +0.1 138,839 + -0.2 138,839 + -0.1 138,840 - -1.6 138,840 - +0.2 138,840 - -0.3 138,840 - -1.6 138,840 - -0.4 139,011 + SMc04133 0.17 -0.3 139,012 - SMc04133 0.17 +0.9 139,012 - SMc04133 0.17 -0.6 139,012 - SMc04133 0.17 +0.1 139,142 - SMc04133 0.28 +1.3 139,436 - SMc04133 0.54 +0.0 139,436 - SMc04133 0.54 -1.0 139,529 - SMc04133 0.62 +0.9 139,593 + SMc04133 0.67 -0.1 139,594 - SMc04133 0.67 +0.1
Or see this region's nucleotide sequence