Strain Fitness in Sinorhizobium meliloti 1021 around SMc03984

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03983 and SMc03984 are separated by 174 nucleotidesSMc03984 and SMc03985 are separated by 12 nucleotides SMc03983: SMc03983 - fructose-bisphosphate aldolase class I protein, at 2,980,339 to 2,981,364 SMc03983 SMc03984: SMc03984 - hypothetical protein, at 2,981,539 to 2,982,456 SMc03984 SMc03985: SMc03985 - adenylate/guanylate cyclase, at 2,982,469 to 2,984,373 SMc03985 Position (kb) 2981 2982 2983Strain fitness (log2 ratio) -1 0 1 2at 2980.543 kb on + strand, within SMc03983at 2980.544 kb on - strand, within SMc03983at 2980.718 kb on - strand, within SMc03983at 2981.203 kb on - strand, within SMc03983at 2981.363 kb on - strandat 2981.375 kb on - strandat 2981.375 kb on - strandat 2981.503 kb on + strandat 2982.031 kb on + strand, within SMc03984at 2982.167 kb on - strand, within SMc03984at 2982.167 kb on - strand, within SMc03984at 2982.167 kb on - strand, within SMc03984at 2982.198 kb on - strand, within SMc03984at 2982.198 kb on - strand, within SMc03984at 2982.466 kb on + strandat 2982.466 kb on + strandat 2982.578 kb on + strandat 2982.578 kb on + strandat 2982.579 kb on - strandat 2982.579 kb on - strandat 2982.741 kb on + strand, within SMc03985at 2982.742 kb on - strand, within SMc03985at 2982.742 kb on - strand, within SMc03985at 2982.742 kb on - strand, within SMc03985at 2982.748 kb on + strand, within SMc03985at 2982.872 kb on + strand, within SMc03985at 2982.872 kb on + strand, within SMc03985at 2982.873 kb on - strand, within SMc03985at 2982.873 kb on - strand, within SMc03985at 2982.987 kb on - strand, within SMc03985at 2982.989 kb on + strand, within SMc03985at 2982.989 kb on + strand, within SMc03985at 2982.992 kb on - strand, within SMc03985at 2982.992 kb on - strand, within SMc03985at 2983.150 kb on + strand, within SMc03985at 2983.150 kb on + strand, within SMc03985at 2983.151 kb on - strand, within SMc03985at 2983.151 kb on - strand, within SMc03985at 2983.151 kb on - strand, within SMc03985at 2983.152 kb on + strand, within SMc03985at 2983.152 kb on + strand, within SMc03985at 2983.153 kb on - strand, within SMc03985at 2983.153 kb on - strand, within SMc03985at 2983.232 kb on + strand, within SMc03985at 2983.233 kb on - strand, within SMc03985at 2983.233 kb on - strand, within SMc03985at 2983.233 kb on - strand, within SMc03985at 2983.287 kb on - strand, within SMc03985at 2983.328 kb on + strand, within SMc03985at 2983.328 kb on + strand, within SMc03985at 2983.328 kb on + strand, within SMc03985at 2983.330 kb on + strand, within SMc03985at 2983.331 kb on + strand, within SMc03985at 2983.331 kb on + strand, within SMc03985at 2983.331 kb on + strand, within SMc03985at 2983.331 kb on + strand, within SMc03985at 2983.332 kb on - strand, within SMc03985at 2983.332 kb on - strand, within SMc03985at 2983.335 kb on + strand, within SMc03985at 2983.335 kb on + strand, within SMc03985at 2983.335 kb on + strand, within SMc03985at 2983.335 kb on + strand, within SMc03985at 2983.335 kb on + strand, within SMc03985at 2983.335 kb on + strand, within SMc03985at 2983.336 kb on - strand, within SMc03985at 2983.336 kb on - strand, within SMc03985at 2983.338 kb on - strand, within SMc03985at 2983.399 kb on + strand, within SMc03985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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2,980,543 + SMc03983 0.20 -0.1
2,980,544 - SMc03983 0.20 -0.6
2,980,718 - SMc03983 0.37 -0.2
2,981,203 - SMc03983 0.84 +0.5
2,981,363 - +0.1
2,981,375 - +0.1
2,981,375 - +0.0
2,981,503 + +0.5
2,982,031 + SMc03984 0.54 +1.0
2,982,167 - SMc03984 0.68 -0.3
2,982,167 - SMc03984 0.68 +1.2
2,982,167 - SMc03984 0.68 +0.3
2,982,198 - SMc03984 0.72 +0.2
2,982,198 - SMc03984 0.72 +0.9
2,982,466 + -0.4
2,982,466 + -0.9
2,982,578 + +0.1
2,982,578 + -0.3
2,982,579 - -1.1
2,982,579 - -0.5
2,982,741 + SMc03985 0.14 +0.6
2,982,742 - SMc03985 0.14 +0.2
2,982,742 - SMc03985 0.14 -0.0
2,982,742 - SMc03985 0.14 -0.1
2,982,748 + SMc03985 0.15 -0.1
2,982,872 + SMc03985 0.21 -0.3
2,982,872 + SMc03985 0.21 -0.3
2,982,873 - SMc03985 0.21 +0.6
2,982,873 - SMc03985 0.21 +0.5
2,982,987 - SMc03985 0.27 +0.2
2,982,989 + SMc03985 0.27 +0.5
2,982,989 + SMc03985 0.27 -0.1
2,982,992 - SMc03985 0.27 -0.5
2,982,992 - SMc03985 0.27 -0.5
2,983,150 + SMc03985 0.36 +0.6
2,983,150 + SMc03985 0.36 -0.2
2,983,151 - SMc03985 0.36 +0.6
2,983,151 - SMc03985 0.36 -0.3
2,983,151 - SMc03985 0.36 -0.6
2,983,152 + SMc03985 0.36 +0.0
2,983,152 + SMc03985 0.36 -0.2
2,983,153 - SMc03985 0.36 +0.3
2,983,153 - SMc03985 0.36 +0.3
2,983,232 + SMc03985 0.40 +0.3
2,983,233 - SMc03985 0.40 +0.3
2,983,233 - SMc03985 0.40 +0.8
2,983,233 - SMc03985 0.40 -1.1
2,983,287 - SMc03985 0.43 +0.0
2,983,328 + SMc03985 0.45 +0.3
2,983,328 + SMc03985 0.45 +0.5
2,983,328 + SMc03985 0.45 -0.3
2,983,330 + SMc03985 0.45 -0.2
2,983,331 + SMc03985 0.45 -0.3
2,983,331 + SMc03985 0.45 +1.5
2,983,331 + SMc03985 0.45 +0.2
2,983,331 + SMc03985 0.45 -0.5
2,983,332 - SMc03985 0.45 -0.5
2,983,332 - SMc03985 0.45 -0.3
2,983,335 + SMc03985 0.45 +1.9
2,983,335 + SMc03985 0.45 -0.7
2,983,335 + SMc03985 0.45 +0.0
2,983,335 + SMc03985 0.45 -0.2
2,983,335 + SMc03985 0.45 -0.0
2,983,335 + SMc03985 0.45 -0.4
2,983,336 - SMc03985 0.46 -0.0
2,983,336 - SMc03985 0.46 -0.4
2,983,338 - SMc03985 0.46 +0.6
2,983,399 + SMc03985 0.49 +0.1

Or see this region's nucleotide sequence