Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03784 and SMc03785 are separated by 84 nucleotides SMc03785 and SMc03786 are separated by 215 nucleotides SMc03786 and SMc03787 overlap by 35 nucleotides SMc03787 and SMc03788 are separated by 281 nucleotides
SMc03784: SMc03784 - hypothetical protein, at 3,449,460 to 3,450,662
SMc03784
SMc03785: SMc03785 - dinucleoside polyphosphate hydrolase, at 3,450,747 to 3,451,250
SMc03785
SMc03786: SMc03786 - bacterioferritin, at 3,451,466 to 3,451,951
SMc03786
SMc03787: SMc03787 - hypothetical protein, at 3,451,917 to 3,452,228
SMc03787
SMc03788: SMc03788 - DNA polymerase III subunit alpha, at 3,452,510 to 3,455,860
SMc03788
Position (kb)
3451
3452 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3450.675 kb on - strand at 3450.735 kb on - strand at 3450.853 kb on - strand, within SMc03785 at 3450.939 kb on + strand, within SMc03785 at 3450.999 kb on + strand, within SMc03785 at 3451.045 kb on - strand, within SMc03785 at 3451.209 kb on + strand at 3451.436 kb on + strand at 3451.436 kb on + strand at 3451.467 kb on + strand at 3451.468 kb on - strand at 3451.559 kb on + strand, within SMc03786 at 3451.560 kb on - strand, within SMc03786 at 3451.611 kb on + strand, within SMc03786 at 3451.648 kb on + strand, within SMc03786 at 3451.840 kb on + strand, within SMc03786 at 3451.840 kb on + strand, within SMc03786 at 3451.841 kb on - strand, within SMc03786 at 3451.841 kb on - strand, within SMc03786 at 3451.843 kb on - strand, within SMc03786 at 3451.906 kb on - strand at 3452.007 kb on + strand, within SMc03787 at 3452.009 kb on + strand, within SMc03787 at 3452.041 kb on + strand, within SMc03787 at 3452.041 kb on + strand, within SMc03787 at 3452.042 kb on - strand, within SMc03787 at 3452.042 kb on - strand, within SMc03787 at 3452.042 kb on - strand, within SMc03787 at 3452.122 kb on + strand, within SMc03787 at 3452.331 kb on + strand at 3452.373 kb on - strand at 3452.417 kb on - strand at 3452.717 kb on + strand at 3452.718 kb on - strand at 3452.718 kb on - strand at 3452.719 kb on + strand at 3452.719 kb on + strand at 3452.720 kb on - strand at 3452.848 kb on + strand, within SMc03788 at 3452.849 kb on - strand, within SMc03788 at 3452.924 kb on + strand, within SMc03788 at 3452.925 kb on - strand, within SMc03788
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 3,450,675 - +1.3 3,450,735 - -0.4 3,450,853 - SMc03785 0.21 +0.2 3,450,939 + SMc03785 0.38 +0.2 3,450,999 + SMc03785 0.50 +0.6 3,451,045 - SMc03785 0.59 -0.2 3,451,209 + +0.3 3,451,436 + +0.6 3,451,436 + +0.6 3,451,467 + +1.0 3,451,468 - +0.3 3,451,559 + SMc03786 0.19 -0.3 3,451,560 - SMc03786 0.19 -1.1 3,451,611 + SMc03786 0.30 -0.3 3,451,648 + SMc03786 0.37 -1.0 3,451,840 + SMc03786 0.77 -1.5 3,451,840 + SMc03786 0.77 -0.9 3,451,841 - SMc03786 0.77 -1.5 3,451,841 - SMc03786 0.77 -0.4 3,451,843 - SMc03786 0.78 -0.6 3,451,906 - +0.2 3,452,007 + SMc03787 0.29 +0.5 3,452,009 + SMc03787 0.29 -0.9 3,452,041 + SMc03787 0.40 -5.3 3,452,041 + SMc03787 0.40 -0.4 3,452,042 - SMc03787 0.40 -0.0 3,452,042 - SMc03787 0.40 -0.2 3,452,042 - SMc03787 0.40 -0.2 3,452,122 + SMc03787 0.66 +0.1 3,452,331 + +0.2 3,452,373 - -0.2 3,452,417 - +0.5 3,452,717 + -1.5 3,452,718 - -0.1 3,452,718 - -0.2 3,452,719 + -0.8 3,452,719 + -0.1 3,452,720 - +1.6 3,452,848 + SMc03788 0.10 -0.5 3,452,849 - SMc03788 0.10 -0.0 3,452,924 + SMc03788 0.12 +0.7 3,452,925 - SMc03788 0.12 +0.6
Or see this region's nucleotide sequence