Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02649 and SMc02648 overlap by 4 nucleotides SMc02648 and SMc02647 overlap by 1 nucleotides SMc02647 and SMc02646 are separated by 57 nucleotides
SMc02649: SMc02649 - arsenate reductase, at 1,172,062 to 1,172,484
SMc02649
SMc02648: SMc02648 - transport transmembrane protein, at 1,172,481 to 1,173,182
SMc02648
SMc02647: SMc02647 - transcriptional regulator, at 1,173,182 to 1,173,595
SMc02647
SMc02646: SMc02646 - hypothetical protein, at 1,173,653 to 1,174,654
SMc02646
Position (kb)
1173
1174 Strain fitness (log2 ratio)
-1
0
1 at 1172.345 kb on - strand, within SMc02649 at 1172.422 kb on + strand, within SMc02649 at 1172.423 kb on - strand, within SMc02649 at 1172.463 kb on + strand at 1172.464 kb on - strand at 1172.464 kb on - strand at 1172.468 kb on + strand at 1172.469 kb on - strand at 1172.469 kb on - strand at 1172.469 kb on - strand at 1172.693 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.761 kb on - strand, within SMc02648 at 1172.761 kb on - strand, within SMc02648 at 1172.915 kb on - strand, within SMc02648 at 1172.915 kb on - strand, within SMc02648 at 1172.915 kb on - strand, within SMc02648 at 1172.936 kb on + strand, within SMc02648 at 1172.936 kb on + strand, within SMc02648 at 1172.937 kb on - strand, within SMc02648 at 1173.080 kb on + strand, within SMc02648 at 1173.378 kb on + strand, within SMc02647 at 1173.608 kb on - strand at 1173.654 kb on + strand at 1173.655 kb on - strand at 1173.734 kb on + strand at 1173.735 kb on - strand at 1173.739 kb on - strand at 1173.897 kb on + strand, within SMc02646 at 1173.969 kb on + strand, within SMc02646
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,172,345 - SMc02649 0.67 +0.2 1,172,422 + SMc02649 0.85 -1.1 1,172,423 - SMc02649 0.85 -0.6 1,172,463 + +1.0 1,172,464 - +0.3 1,172,464 - -0.7 1,172,468 + +1.4 1,172,469 - +0.2 1,172,469 - +0.5 1,172,469 - -0.9 1,172,693 - SMc02648 0.30 +1.0 1,172,708 - SMc02648 0.32 -0.1 1,172,708 - SMc02648 0.32 -0.5 1,172,708 - SMc02648 0.32 +0.1 1,172,708 - SMc02648 0.32 +0.3 1,172,708 - SMc02648 0.32 -0.4 1,172,761 - SMc02648 0.40 -0.5 1,172,761 - SMc02648 0.40 -0.2 1,172,915 - SMc02648 0.62 -0.1 1,172,915 - SMc02648 0.62 +0.5 1,172,915 - SMc02648 0.62 +0.7 1,172,936 + SMc02648 0.65 -0.0 1,172,936 + SMc02648 0.65 +0.9 1,172,937 - SMc02648 0.65 -1.1 1,173,080 + SMc02648 0.85 -0.3 1,173,378 + SMc02647 0.47 -1.4 1,173,608 - +0.6 1,173,654 + +0.4 1,173,655 - -0.3 1,173,734 + +0.5 1,173,735 - -1.5 1,173,739 - -0.7 1,173,897 + SMc02646 0.24 +0.1 1,173,969 + SMc02646 0.32 +1.4
Or see this region's nucleotide sequence