Strain Fitness in Sinorhizobium meliloti 1021 around SMc01630

Experiment: R2A-HEPES control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01629 and SMc01630 are separated by 206 nucleotidesSMc01630 and SMc01631 are separated by 184 nucleotides SMc01629: SMc01629 - ERY operon repressor transcription regulator protein, at 2,421,233 to 2,422,192 SMc01629 SMc01630: SMc01630 - transcriptional regulator, at 2,422,399 to 2,423,202 SMc01630 SMc01631: SMc01631 - ABC transporter ATP-binding protein, at 2,423,387 to 2,424,466 SMc01631 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -2 -1 0 1at 2421.482 kb on + strand, within SMc01629at 2421.663 kb on + strand, within SMc01629at 2421.663 kb on + strand, within SMc01629at 2421.664 kb on - strand, within SMc01629at 2421.664 kb on - strand, within SMc01629at 2421.664 kb on - strand, within SMc01629at 2421.664 kb on - strand, within SMc01629at 2421.763 kb on + strand, within SMc01629at 2421.763 kb on + strand, within SMc01629at 2421.763 kb on + strand, within SMc01629at 2421.763 kb on + strand, within SMc01629at 2421.764 kb on - strand, within SMc01629at 2421.789 kb on + strand, within SMc01629at 2421.789 kb on + strand, within SMc01629at 2421.942 kb on + strand, within SMc01629at 2421.942 kb on + strand, within SMc01629at 2421.943 kb on - strand, within SMc01629at 2422.010 kb on - strand, within SMc01629at 2422.011 kb on + strand, within SMc01629at 2422.011 kb on + strand, within SMc01629at 2422.012 kb on - strand, within SMc01629at 2422.012 kb on - strand, within SMc01629at 2422.012 kb on - strand, within SMc01629at 2422.192 kb on + strandat 2422.239 kb on + strandat 2422.401 kb on - strandat 2422.401 kb on - strandat 2422.421 kb on + strandat 2422.421 kb on + strandat 2422.421 kb on + strandat 2422.467 kb on - strandat 2422.859 kb on + strand, within SMc01630at 2422.859 kb on + strand, within SMc01630at 2422.860 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.863 kb on - strand, within SMc01630at 2422.872 kb on - strand, within SMc01630at 2422.875 kb on - strand, within SMc01630at 2422.875 kb on - strand, within SMc01630at 2422.952 kb on + strand, within SMc01630at 2422.970 kb on + strand, within SMc01630at 2422.970 kb on + strand, within SMc01630at 2422.971 kb on - strand, within SMc01630at 2422.971 kb on - strand, within SMc01630at 2422.986 kb on - strand, within SMc01630at 2423.026 kb on - strand, within SMc01630at 2423.031 kb on - strand, within SMc01630at 2423.031 kb on - strand, within SMc01630at 2423.079 kb on - strand, within SMc01630at 2423.286 kb on - strandat 2423.438 kb on + strandat 2423.438 kb on + strandat 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.582 kb on + strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.583 kb on - strand, within SMc01631at 2423.651 kb on + strand, within SMc01631at 2423.652 kb on - strand, within SMc01631at 2423.694 kb on - strand, within SMc01631at 2423.719 kb on + strand, within SMc01631at 2424.004 kb on + strand, within SMc01631at 2424.071 kb on + strand, within SMc01631at 2424.072 kb on - strand, within SMc01631at 2424.072 kb on - strand, within SMc01631at 2424.072 kb on - strand, within SMc01631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
remove
2,421,482 + SMc01629 0.26 -0.1
2,421,663 + SMc01629 0.45 -1.3
2,421,663 + SMc01629 0.45 -0.3
2,421,664 - SMc01629 0.45 +0.7
2,421,664 - SMc01629 0.45 -0.7
2,421,664 - SMc01629 0.45 -0.2
2,421,664 - SMc01629 0.45 -0.3
2,421,763 + SMc01629 0.55 -0.8
2,421,763 + SMc01629 0.55 -0.9
2,421,763 + SMc01629 0.55 -1.0
2,421,763 + SMc01629 0.55 -1.5
2,421,764 - SMc01629 0.55 -0.8
2,421,789 + SMc01629 0.58 -0.1
2,421,789 + SMc01629 0.58 -0.7
2,421,942 + SMc01629 0.74 +0.8
2,421,942 + SMc01629 0.74 -0.9
2,421,943 - SMc01629 0.74 -0.2
2,422,010 - SMc01629 0.81 +0.4
2,422,011 + SMc01629 0.81 -1.7
2,422,011 + SMc01629 0.81 -0.6
2,422,012 - SMc01629 0.81 +0.2
2,422,012 - SMc01629 0.81 -0.3
2,422,012 - SMc01629 0.81 +0.1
2,422,192 + -1.6
2,422,239 + -0.6
2,422,401 - -0.2
2,422,401 - +0.8
2,422,421 + -0.5
2,422,421 + +0.3
2,422,421 + +1.4
2,422,467 - +0.6
2,422,859 + SMc01630 0.57 +0.2
2,422,859 + SMc01630 0.57 -1.6
2,422,860 - SMc01630 0.57 -0.6
2,422,863 - SMc01630 0.58 +1.0
2,422,863 - SMc01630 0.58 -0.2
2,422,863 - SMc01630 0.58 +0.2
2,422,863 - SMc01630 0.58 +0.3
2,422,863 - SMc01630 0.58 +0.0
2,422,863 - SMc01630 0.58 -0.3
2,422,872 - SMc01630 0.59 +1.4
2,422,875 - SMc01630 0.59 +0.6
2,422,875 - SMc01630 0.59 +0.4
2,422,952 + SMc01630 0.69 -0.2
2,422,970 + SMc01630 0.71 -1.8
2,422,970 + SMc01630 0.71 +0.1
2,422,971 - SMc01630 0.71 -0.0
2,422,971 - SMc01630 0.71 -0.4
2,422,986 - SMc01630 0.73 -0.2
2,423,026 - SMc01630 0.78 +0.1
2,423,031 - SMc01630 0.79 -0.2
2,423,031 - SMc01630 0.79 +1.4
2,423,079 - SMc01630 0.85 -0.5
2,423,286 - +0.6
2,423,438 + +0.4
2,423,438 + +0.1
2,423,582 + SMc01631 0.18 -0.8
2,423,582 + SMc01631 0.18 -0.5
2,423,582 + SMc01631 0.18 -0.2
2,423,582 + SMc01631 0.18 -0.6
2,423,582 + SMc01631 0.18 +0.6
2,423,582 + SMc01631 0.18 +0.6
2,423,582 + SMc01631 0.18 -0.5
2,423,582 + SMc01631 0.18 -0.1
2,423,582 + SMc01631 0.18 -1.0
2,423,583 - SMc01631 0.18 +0.4
2,423,583 - SMc01631 0.18 -0.1
2,423,583 - SMc01631 0.18 -0.1
2,423,583 - SMc01631 0.18 +0.7
2,423,583 - SMc01631 0.18 -0.3
2,423,651 + SMc01631 0.24 -0.4
2,423,652 - SMc01631 0.25 +0.0
2,423,694 - SMc01631 0.28 -0.2
2,423,719 + SMc01631 0.31 -0.1
2,424,004 + SMc01631 0.57 -0.9
2,424,071 + SMc01631 0.63 +0.1
2,424,072 - SMc01631 0.63 +0.7
2,424,072 - SMc01631 0.63 +0.1
2,424,072 - SMc01631 0.63 -0.4

Or see this region's nucleotide sequence