Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1884 and SMa1885 overlap by 4 nucleotides SMa1885 and SMa1887 are separated by 65 nucleotides SMa1887 and SMa1890 are separated by 96 nucleotides
SMa1884: SMa1884 - Cation/multidrug efflux protein, at 1,069,938 to 1,073,048
SMa1884
SMa1885: SMa1885 - membrane efflux protein, at 1,073,045 to 1,074,193
SMa1885
SMa1887: SMa1887 - transcriptional regulator, at 1,074,259 to 1,074,861
SMa1887
SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602
SMa1890
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1072.100 kb on + strand, within SMa1884 at 1072.339 kb on + strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.340 kb on - strand, within SMa1884 at 1072.596 kb on - strand, within SMa1884 at 1072.639 kb on + strand, within SMa1884 at 1072.640 kb on - strand, within SMa1884 at 1072.717 kb on + strand, within SMa1884 at 1072.813 kb on + strand at 1072.894 kb on - strand at 1072.894 kb on - strand at 1072.899 kb on - strand at 1073.364 kb on + strand, within SMa1885 at 1073.365 kb on - strand, within SMa1885 at 1073.376 kb on + strand, within SMa1885 at 1073.376 kb on + strand at 1073.377 kb on - strand, within SMa1885 at 1073.377 kb on - strand, within SMa1885 at 1073.452 kb on - strand, within SMa1885 at 1073.631 kb on + strand, within SMa1885 at 1073.678 kb on + strand, within SMa1885 at 1073.678 kb on + strand, within SMa1885 at 1073.679 kb on - strand, within SMa1885 at 1073.722 kb on - strand, within SMa1885 at 1073.722 kb on - strand, within SMa1885 at 1073.766 kb on + strand, within SMa1885 at 1073.766 kb on + strand, within SMa1885 at 1073.767 kb on - strand, within SMa1885 at 1073.824 kb on + strand, within SMa1885 at 1073.977 kb on + strand, within SMa1885 at 1073.978 kb on - strand, within SMa1885 at 1073.978 kb on - strand, within SMa1885 at 1074.030 kb on - strand, within SMa1885 at 1074.030 kb on - strand, within SMa1885 at 1075.177 kb on + strand, within SMa1890 at 1075.177 kb on + strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,072,100 + SMa1884 0.69 +0.7 1,072,339 + SMa1884 0.77 -0.7 1,072,340 - SMa1884 0.77 -1.0 1,072,340 - SMa1884 0.77 -0.7 1,072,340 - SMa1884 0.77 +2.4 1,072,340 - SMa1884 0.77 +0.0 1,072,340 - SMa1884 0.77 -0.3 1,072,596 - SMa1884 0.85 +1.4 1,072,639 + SMa1884 0.87 +1.2 1,072,640 - SMa1884 0.87 +0.2 1,072,717 + SMa1884 0.89 -0.1 1,072,813 + +0.1 1,072,894 - -1.3 1,072,894 - -0.0 1,072,899 - -0.3 1,073,364 + SMa1885 0.28 +0.3 1,073,365 - SMa1885 0.28 +0.1 1,073,376 + SMa1885 0.29 +0.1 1,073,376 + +0.4 1,073,377 - SMa1885 0.29 +0.0 1,073,377 - SMa1885 0.29 +0.1 1,073,452 - SMa1885 0.35 +0.8 1,073,631 + SMa1885 0.51 -0.4 1,073,678 + SMa1885 0.55 +0.7 1,073,678 + SMa1885 0.55 +0.4 1,073,679 - SMa1885 0.55 +0.1 1,073,722 - SMa1885 0.59 +0.1 1,073,722 - SMa1885 0.59 +0.3 1,073,766 + SMa1885 0.63 +3.3 1,073,766 + SMa1885 0.63 +1.1 1,073,767 - SMa1885 0.63 +0.5 1,073,824 + SMa1885 0.68 +0.9 1,073,977 + SMa1885 0.81 +0.5 1,073,978 - SMa1885 0.81 +0.1 1,073,978 - SMa1885 0.81 -0.3 1,074,030 - SMa1885 0.86 -0.2 1,074,030 - SMa1885 0.86 +0.4 1,075,177 + SMa1890 0.34 -0.2 1,075,177 + SMa1890 0.34 +0.6 1,075,178 - SMa1890 0.34 -0.4 1,075,178 - SMa1890 0.34 +0.0 1,075,178 - SMa1890 0.34 -1.6 1,075,178 - SMa1890 0.34 +0.0 1,075,178 - SMa1890 0.34 -0.1 1,075,178 - SMa1890 0.34 -0.5 1,075,178 - SMa1890 0.34 +0.1 1,075,178 - SMa1890 0.34 -1.0
Or see this region's nucleotide sequence