Strain Fitness in Sinorhizobium meliloti 1021 around SMa1885

Experiment: R2A-HEPES control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1884 and SMa1885 overlap by 4 nucleotidesSMa1885 and SMa1887 are separated by 65 nucleotidesSMa1887 and SMa1890 are separated by 96 nucleotides SMa1884: SMa1884 - Cation/multidrug efflux protein, at 1,069,938 to 1,073,048 SMa1884 SMa1885: SMa1885 - membrane efflux protein, at 1,073,045 to 1,074,193 SMa1885 SMa1887: SMa1887 - transcriptional regulator, at 1,074,259 to 1,074,861 SMa1887 SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602 SMa1890 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -1 0 1 2 3at 1072.100 kb on + strand, within SMa1884at 1072.339 kb on + strand, within SMa1884at 1072.340 kb on - strand, within SMa1884at 1072.340 kb on - strand, within SMa1884at 1072.340 kb on - strand, within SMa1884at 1072.340 kb on - strand, within SMa1884at 1072.340 kb on - strand, within SMa1884at 1072.596 kb on - strand, within SMa1884at 1072.639 kb on + strand, within SMa1884at 1072.640 kb on - strand, within SMa1884at 1072.717 kb on + strand, within SMa1884at 1072.813 kb on + strandat 1072.894 kb on - strandat 1072.894 kb on - strandat 1072.899 kb on - strandat 1073.364 kb on + strand, within SMa1885at 1073.365 kb on - strand, within SMa1885at 1073.376 kb on + strand, within SMa1885at 1073.376 kb on + strandat 1073.377 kb on - strand, within SMa1885at 1073.377 kb on - strand, within SMa1885at 1073.452 kb on - strand, within SMa1885at 1073.631 kb on + strand, within SMa1885at 1073.678 kb on + strand, within SMa1885at 1073.678 kb on + strand, within SMa1885at 1073.679 kb on - strand, within SMa1885at 1073.722 kb on - strand, within SMa1885at 1073.722 kb on - strand, within SMa1885at 1073.766 kb on + strand, within SMa1885at 1073.766 kb on + strand, within SMa1885at 1073.767 kb on - strand, within SMa1885at 1073.824 kb on + strand, within SMa1885at 1073.977 kb on + strand, within SMa1885at 1073.978 kb on - strand, within SMa1885at 1073.978 kb on - strand, within SMa1885at 1074.030 kb on - strand, within SMa1885at 1074.030 kb on - strand, within SMa1885at 1075.177 kb on + strand, within SMa1890at 1075.177 kb on + strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
remove
1,072,100 + SMa1884 0.69 +0.7
1,072,339 + SMa1884 0.77 -0.7
1,072,340 - SMa1884 0.77 -1.0
1,072,340 - SMa1884 0.77 -0.7
1,072,340 - SMa1884 0.77 +2.4
1,072,340 - SMa1884 0.77 +0.0
1,072,340 - SMa1884 0.77 -0.3
1,072,596 - SMa1884 0.85 +1.4
1,072,639 + SMa1884 0.87 +1.2
1,072,640 - SMa1884 0.87 +0.2
1,072,717 + SMa1884 0.89 -0.1
1,072,813 + +0.1
1,072,894 - -1.3
1,072,894 - -0.0
1,072,899 - -0.3
1,073,364 + SMa1885 0.28 +0.3
1,073,365 - SMa1885 0.28 +0.1
1,073,376 + SMa1885 0.29 +0.1
1,073,376 + +0.4
1,073,377 - SMa1885 0.29 +0.0
1,073,377 - SMa1885 0.29 +0.1
1,073,452 - SMa1885 0.35 +0.8
1,073,631 + SMa1885 0.51 -0.4
1,073,678 + SMa1885 0.55 +0.7
1,073,678 + SMa1885 0.55 +0.4
1,073,679 - SMa1885 0.55 +0.1
1,073,722 - SMa1885 0.59 +0.1
1,073,722 - SMa1885 0.59 +0.3
1,073,766 + SMa1885 0.63 +3.3
1,073,766 + SMa1885 0.63 +1.1
1,073,767 - SMa1885 0.63 +0.5
1,073,824 + SMa1885 0.68 +0.9
1,073,977 + SMa1885 0.81 +0.5
1,073,978 - SMa1885 0.81 +0.1
1,073,978 - SMa1885 0.81 -0.3
1,074,030 - SMa1885 0.86 -0.2
1,074,030 - SMa1885 0.86 +0.4
1,075,177 + SMa1890 0.34 -0.2
1,075,177 + SMa1890 0.34 +0.6
1,075,178 - SMa1890 0.34 -0.4
1,075,178 - SMa1890 0.34 +0.0
1,075,178 - SMa1890 0.34 -1.6
1,075,178 - SMa1890 0.34 +0.0
1,075,178 - SMa1890 0.34 -0.1
1,075,178 - SMa1890 0.34 -0.5
1,075,178 - SMa1890 0.34 +0.1
1,075,178 - SMa1890 0.34 -1.0

Or see this region's nucleotide sequence