Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0308 and SMa0310 are separated by 250 nucleotides SMa0310 and SMa0312 are separated by 338 nucleotides SMa0312 and SMa0314 overlap by 4 nucleotides
SMa0308: SMa0308 - hypothetical protein, at 173,063 to 174,022
SMa0308
SMa0310: SMa0310 - hypothetical protein, at 174,273 to 175,004
SMa0310
SMa0312: SMa0312 - hypothetical protein, at 175,343 to 175,876
SMa0312
SMa0314: SMa0314 - hypothetical protein, at 175,873 to 176,124
SMa0314
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1 at 173.400 kb on + strand, within SMa0308 at 173.401 kb on - strand, within SMa0308 at 173.485 kb on + strand, within SMa0308 at 173.485 kb on + strand, within SMa0308 at 173.486 kb on - strand, within SMa0308 at 173.486 kb on - strand, within SMa0308 at 173.551 kb on - strand, within SMa0308 at 173.660 kb on + strand, within SMa0308 at 173.660 kb on + strand, within SMa0308 at 173.661 kb on - strand, within SMa0308 at 173.732 kb on + strand, within SMa0308 at 173.732 kb on + strand, within SMa0308 at 173.743 kb on + strand, within SMa0308 at 173.743 kb on + strand, within SMa0308 at 173.743 kb on + strand, within SMa0308 at 173.744 kb on - strand, within SMa0308 at 173.744 kb on - strand, within SMa0308 at 173.744 kb on - strand, within SMa0308 at 173.794 kb on - strand, within SMa0308 at 173.821 kb on + strand, within SMa0308 at 173.927 kb on + strand at 173.948 kb on - strand at 173.994 kb on - strand at 174.014 kb on + strand at 174.015 kb on - strand at 174.254 kb on + strand at 174.255 kb on - strand at 174.335 kb on + strand at 174.385 kb on + strand, within SMa0310 at 174.385 kb on + strand, within SMa0310 at 174.385 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.424 kb on + strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.425 kb on - strand, within SMa0310 at 174.455 kb on + strand, within SMa0310 at 174.456 kb on - strand, within SMa0310 at 174.456 kb on - strand, within SMa0310 at 174.456 kb on - strand, within SMa0310 at 174.459 kb on - strand, within SMa0310 at 174.540 kb on + strand, within SMa0310 at 174.540 kb on + strand, within SMa0310 at 174.541 kb on - strand, within SMa0310 at 174.716 kb on + strand, within SMa0310 at 174.878 kb on + strand, within SMa0310 at 174.879 kb on - strand, within SMa0310 at 175.153 kb on + strand at 175.160 kb on - strand at 175.238 kb on - strand at 175.384 kb on + strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.508 kb on + strand, within SMa0312 at 175.508 kb on + strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.900 kb on + strand, within SMa0314
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 173,400 + SMa0308 0.35 -0.2 173,401 - SMa0308 0.35 -0.1 173,485 + SMa0308 0.44 +0.1 173,485 + SMa0308 0.44 -0.5 173,486 - SMa0308 0.44 -0.5 173,486 - SMa0308 0.44 +0.3 173,551 - SMa0308 0.51 +0.3 173,660 + SMa0308 0.62 -0.0 173,660 + SMa0308 0.62 -0.2 173,661 - SMa0308 0.62 +0.2 173,732 + SMa0308 0.70 +0.1 173,732 + SMa0308 0.70 -0.4 173,743 + SMa0308 0.71 +0.1 173,743 + SMa0308 0.71 -0.1 173,743 + SMa0308 0.71 -0.7 173,744 - SMa0308 0.71 +0.4 173,744 - SMa0308 0.71 -0.9 173,744 - SMa0308 0.71 -0.3 173,794 - SMa0308 0.76 +0.2 173,821 + SMa0308 0.79 +0.1 173,927 + -1.1 173,948 - -0.9 173,994 - -1.4 174,014 + +0.3 174,015 - -0.3 174,254 + -1.0 174,255 - +0.0 174,335 + -0.4 174,385 + SMa0310 0.15 -0.7 174,385 + SMa0310 0.15 -1.2 174,385 + SMa0310 0.15 +0.0 174,424 + SMa0310 0.21 +0.1 174,424 + SMa0310 0.21 -0.0 174,424 + SMa0310 0.21 -0.4 174,424 + SMa0310 0.21 -0.4 174,424 + SMa0310 0.21 -1.1 174,425 - SMa0310 0.21 +0.1 174,425 - SMa0310 0.21 -0.0 174,425 - SMa0310 0.21 -0.0 174,425 - SMa0310 0.21 -2.7 174,425 - SMa0310 0.21 -0.6 174,455 + SMa0310 0.25 +0.3 174,456 - SMa0310 0.25 -0.2 174,456 - SMa0310 0.25 -0.1 174,456 - SMa0310 0.25 -0.4 174,459 - SMa0310 0.25 -1.6 174,540 + SMa0310 0.36 +0.2 174,540 + SMa0310 0.36 -1.1 174,541 - SMa0310 0.37 +0.0 174,716 + SMa0310 0.61 -0.6 174,878 + SMa0310 0.83 -0.3 174,879 - SMa0310 0.83 +0.3 175,153 + +0.2 175,160 - -0.0 175,238 - +0.0 175,384 + -0.6 175,385 - -0.4 175,385 - +1.0 175,508 + SMa0312 0.31 -0.1 175,508 + SMa0312 0.31 -0.4 175,509 - SMa0312 0.31 -1.6 175,509 - SMa0312 0.31 -1.1 175,900 + SMa0314 0.11 +0.6
Or see this region's nucleotide sequence