Strain Fitness in Sinorhizobium meliloti 1021 around SMa0070

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0067 and SMa0070 are separated by 185 nucleotidesSMa0070 and SMa0072 overlap by 4 nucleotidesSMa0072 and SMa0074 are separated by 7 nucleotides SMa0067: SMa0067 - ABC transporter substrate-binding protein, at 36,205 to 37,167 SMa0067 SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336 SMa0070 SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064 SMa0072 SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830 SMa0074 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1at 36.481 kb on + strand, within SMa0067at 36.574 kb on - strand, within SMa0067at 36.731 kb on + strand, within SMa0067at 36.742 kb on + strand, within SMa0067at 36.742 kb on + strand, within SMa0067at 36.743 kb on - strand, within SMa0067at 36.992 kb on - strand, within SMa0067at 36.992 kb on - strand, within SMa0067at 36.992 kb on - strand, within SMa0067at 37.021 kb on + strand, within SMa0067at 37.021 kb on + strand, within SMa0067at 37.021 kb on + strand, within SMa0067at 37.021 kb on + strand, within SMa0067at 37.022 kb on - strand, within SMa0067at 37.022 kb on - strand, within SMa0067at 37.054 kb on + strand, within SMa0067at 37.054 kb on + strand, within SMa0067at 37.055 kb on - strand, within SMa0067at 37.686 kb on + strand, within SMa0070at 37.686 kb on + strand, within SMa0070at 37.686 kb on + strand, within SMa0070at 37.686 kb on + strand, within SMa0070at 37.827 kb on + strand, within SMa0070at 37.827 kb on + strand, within SMa0070at 37.827 kb on + strand, within SMa0070at 37.828 kb on - strand, within SMa0070at 37.828 kb on - strand, within SMa0070at 37.828 kb on - strand, within SMa0070at 38.377 kb on + strandat 38.377 kb on + strandat 38.377 kb on + strandat 38.378 kb on - strandat 38.378 kb on - strandat 38.378 kb on - strandat 38.378 kb on - strandat 38.538 kb on + strand, within SMa0072at 38.538 kb on + strand, within SMa0072at 38.588 kb on + strand, within SMa0072at 38.588 kb on + strand, within SMa0072at 38.589 kb on - strand, within SMa0072at 38.589 kb on - strand, within SMa0072at 38.589 kb on - strand, within SMa0072at 38.594 kb on + strand, within SMa0072at 38.595 kb on - strand, within SMa0072at 39.255 kb on + strand, within SMa0074at 39.255 kb on + strand, within SMa0074at 39.256 kb on - strand, within SMa0074at 39.276 kb on - strand, within SMa0074at 39.280 kb on + strand, within SMa0074at 39.281 kb on - strand, within SMa0074at 39.281 kb on - strand, within SMa0074at 39.305 kb on + strand, within SMa0074

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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36,481 + SMa0067 0.29 +0.3
36,574 - SMa0067 0.38 -0.5
36,731 + SMa0067 0.55 +0.2
36,742 + SMa0067 0.56 +0.4
36,742 + SMa0067 0.56 -0.3
36,743 - SMa0067 0.56 -0.4
36,992 - SMa0067 0.82 -2.0
36,992 - SMa0067 0.82 -0.2
36,992 - SMa0067 0.82 -0.1
37,021 + SMa0067 0.85 +0.4
37,021 + SMa0067 0.85 +1.3
37,021 + SMa0067 0.85 +0.1
37,021 + SMa0067 0.85 +0.3
37,022 - SMa0067 0.85 +0.0
37,022 - SMa0067 0.85 +0.4
37,054 + SMa0067 0.88 +0.7
37,054 + SMa0067 0.88 +0.1
37,055 - SMa0067 0.88 -0.6
37,686 + SMa0070 0.34 +0.1
37,686 + SMa0070 0.34 -0.6
37,686 + SMa0070 0.34 +0.1
37,686 + SMa0070 0.34 -0.2
37,827 + SMa0070 0.48 -0.6
37,827 + SMa0070 0.48 -0.5
37,827 + SMa0070 0.48 -0.7
37,828 - SMa0070 0.48 -0.0
37,828 - SMa0070 0.48 -0.9
37,828 - SMa0070 0.48 +0.8
38,377 + -0.2
38,377 + -1.5
38,377 + +0.6
38,378 - -2.0
38,378 - -0.1
38,378 - -0.3
38,378 - -0.6
38,538 + SMa0072 0.28 +1.6
38,538 + SMa0072 0.28 +0.0
38,588 + SMa0072 0.35 -0.7
38,588 + SMa0072 0.35 -0.7
38,589 - SMa0072 0.35 -0.9
38,589 - SMa0072 0.35 -0.6
38,589 - SMa0072 0.35 +0.6
38,594 + SMa0072 0.36 +0.6
38,595 - SMa0072 0.36 +0.4
39,255 + SMa0074 0.24 -0.1
39,255 + SMa0074 0.24 +0.2
39,256 - SMa0074 0.24 -1.3
39,276 - SMa0074 0.27 -0.1
39,280 + SMa0074 0.27 -0.2
39,281 - SMa0074 0.28 +0.1
39,281 - SMa0074 0.28 -0.4
39,305 + SMa0074 0.31 -0.5

Or see this region's nucleotide sequence