Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21467

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21466 and SM_b21467 are separated by 245 nucleotidesSM_b21467 and SM_b21468 are separated by 207 nucleotides SM_b21466: SM_b21466 - ABC transporter ATP-binding protein, at 1,393,364 to 1,395,124 _b21466 SM_b21467: SM_b21467 - hypothetical protein, at 1,395,370 to 1,395,714 _b21467 SM_b21468: SM_b21468 - hypothetical protein, at 1,395,922 to 1,397,019 _b21468 Position (kb) 1395 1396Strain fitness (log2 ratio) -1 0 1 2at 1394.492 kb on + strand, within SM_b21466at 1394.492 kb on + strand, within SM_b21466at 1394.592 kb on + strand, within SM_b21466at 1394.592 kb on + strand, within SM_b21466at 1394.593 kb on - strand, within SM_b21466at 1394.904 kb on + strand, within SM_b21466at 1394.904 kb on + strand, within SM_b21466at 1394.905 kb on - strand, within SM_b21466at 1394.973 kb on + strandat 1395.006 kb on + strandat 1395.007 kb on - strandat 1395.106 kb on + strandat 1395.252 kb on + strandat 1395.252 kb on + strandat 1395.253 kb on - strandat 1395.291 kb on - strandat 1395.300 kb on + strandat 1395.300 kb on + strandat 1395.301 kb on - strandat 1395.301 kb on - strandat 1395.315 kb on + strandat 1395.316 kb on - strandat 1395.573 kb on - strand, within SM_b21467at 1395.573 kb on - strand, within SM_b21467at 1395.584 kb on - strand, within SM_b21467at 1395.660 kb on - strand, within SM_b21467at 1395.671 kb on - strand, within SM_b21467at 1395.718 kb on + strandat 1395.725 kb on - strandat 1396.015 kb on + strandat 1396.015 kb on + strandat 1396.015 kb on + strandat 1396.016 kb on - strandat 1396.016 kb on - strandat 1396.076 kb on + strand, within SM_b21468at 1396.076 kb on + strand, within SM_b21468at 1396.076 kb on + strand, within SM_b21468at 1396.107 kb on - strand, within SM_b21468at 1396.107 kb on - strand, within SM_b21468at 1396.107 kb on - strand, within SM_b21468at 1396.128 kb on - strand, within SM_b21468at 1396.134 kb on - strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.292 kb on + strand, within SM_b21468at 1396.397 kb on + strand, within SM_b21468at 1396.459 kb on + strand, within SM_b21468at 1396.460 kb on - strand, within SM_b21468at 1396.568 kb on + strand, within SM_b21468at 1396.568 kb on + strand, within SM_b21468at 1396.568 kb on + strand, within SM_b21468at 1396.569 kb on - strand, within SM_b21468at 1396.596 kb on + strand, within SM_b21468at 1396.596 kb on + strand, within SM_b21468

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,394,492 + SM_b21466 0.64 -0.4
1,394,492 + SM_b21466 0.64 -0.5
1,394,592 + SM_b21466 0.70 +0.0
1,394,592 + SM_b21466 0.70 +1.0
1,394,593 - SM_b21466 0.70 -0.5
1,394,904 + SM_b21466 0.87 -0.5
1,394,904 + SM_b21466 0.87 +0.8
1,394,905 - SM_b21466 0.88 +0.0
1,394,973 + -0.5
1,395,006 + -0.4
1,395,007 - -0.5
1,395,106 + -0.0
1,395,252 + +1.9
1,395,252 + +0.4
1,395,253 - +0.1
1,395,291 - -0.3
1,395,300 + -0.1
1,395,300 + +0.1
1,395,301 - +1.5
1,395,301 - -1.4
1,395,315 + +0.2
1,395,316 - -1.0
1,395,573 - SM_b21467 0.59 -0.4
1,395,573 - SM_b21467 0.59 +0.3
1,395,584 - SM_b21467 0.62 -1.4
1,395,660 - SM_b21467 0.84 -0.4
1,395,671 - SM_b21467 0.87 -1.1
1,395,718 + +0.1
1,395,725 - -0.1
1,396,015 + +0.1
1,396,015 + +0.1
1,396,015 + -0.1
1,396,016 - +1.5
1,396,016 - +0.3
1,396,076 + SM_b21468 0.14 -0.1
1,396,076 + SM_b21468 0.14 +0.2
1,396,076 + SM_b21468 0.14 -0.3
1,396,107 - SM_b21468 0.17 -0.0
1,396,107 - SM_b21468 0.17 +0.1
1,396,107 - SM_b21468 0.17 -0.4
1,396,128 - SM_b21468 0.19 +0.1
1,396,134 - SM_b21468 0.19 -0.4
1,396,184 + SM_b21468 0.24 -0.7
1,396,184 + SM_b21468 0.24 -0.2
1,396,184 + SM_b21468 0.24 -0.6
1,396,184 + SM_b21468 0.24 -0.8
1,396,185 - SM_b21468 0.24 -0.7
1,396,185 - SM_b21468 0.24 +0.0
1,396,185 - SM_b21468 0.24 +0.1
1,396,185 - SM_b21468 0.24 +0.2
1,396,292 + SM_b21468 0.34 -0.3
1,396,397 + SM_b21468 0.43 +0.1
1,396,459 + SM_b21468 0.49 +0.8
1,396,460 - SM_b21468 0.49 +0.3
1,396,568 + SM_b21468 0.59 +0.0
1,396,568 + SM_b21468 0.59 -0.9
1,396,568 + SM_b21468 0.59 -0.1
1,396,569 - SM_b21468 0.59 -0.3
1,396,596 + SM_b21468 0.61 -1.2
1,396,596 + SM_b21468 0.61 -0.1

Or see this region's nucleotide sequence