Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20911

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21681 and SM_b20909 are separated by 111 nucleotidesSM_b20909 and SM_b20910 are separated by 58 nucleotidesSM_b20910 and SM_b20911 are separated by 224 nucleotidesSM_b20911 and SM_b20912 are separated by 23 nucleotides SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583 _b21681 SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988 _b20909 SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355 _b20910 SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786 _b20911 SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904 _b20912 Position (kb) 1319 1320Strain fitness (log2 ratio) -1 0 1 2at 1318.581 kb on + strandat 1318.718 kb on + strandat 1318.826 kb on + strand, within SM_b20909at 1318.827 kb on - strand, within SM_b20909at 1318.963 kb on + strandat 1318.963 kb on + strandat 1318.964 kb on - strandat 1319.022 kb on + strandat 1319.027 kb on + strandat 1319.048 kb on + strandat 1319.130 kb on + strand, within SM_b20910at 1319.131 kb on - strand, within SM_b20910at 1319.131 kb on - strand, within SM_b20910at 1319.178 kb on + strand, within SM_b20910at 1319.178 kb on + strand, within SM_b20910at 1319.179 kb on - strand, within SM_b20910at 1319.254 kb on + strand, within SM_b20910at 1319.269 kb on + strand, within SM_b20910at 1319.270 kb on - strand, within SM_b20910at 1319.270 kb on - strand, within SM_b20910at 1319.416 kb on + strandat 1319.419 kb on - strandat 1319.419 kb on - strandat 1319.419 kb on - strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.422 kb on + strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.423 kb on - strandat 1319.428 kb on + strandat 1319.428 kb on + strandat 1319.429 kb on - strandat 1319.429 kb on - strandat 1319.432 kb on + strandat 1319.432 kb on + strandat 1319.432 kb on + strandat 1319.433 kb on - strandat 1319.599 kb on + strandat 1319.599 kb on + strandat 1319.599 kb on + strandat 1319.599 kb on + strandat 1319.600 kb on - strandat 1319.664 kb on + strand, within SM_b20911at 1319.664 kb on + strand, within SM_b20911at 1319.665 kb on - strand, within SM_b20911at 1319.665 kb on - strand, within SM_b20911at 1319.665 kb on - strand, within SM_b20911at 1319.665 kb on - strand, within SM_b20911at 1319.666 kb on + strand, within SM_b20911at 1319.666 kb on + strand, within SM_b20911at 1319.667 kb on - strand, within SM_b20911at 1319.667 kb on - strand, within SM_b20911at 1319.695 kb on + strand, within SM_b20911at 1319.696 kb on - strand, within SM_b20911at 1319.696 kb on - strand, within SM_b20911at 1319.762 kb on + strand, within SM_b20911at 1319.763 kb on - strand, within SM_b20911at 1319.931 kb on - strand, within SM_b20912at 1319.945 kb on + strand, within SM_b20912at 1319.945 kb on + strand, within SM_b20912at 1320.083 kb on + strand, within SM_b20912at 1320.083 kb on + strand, within SM_b20912at 1320.084 kb on - strand, within SM_b20912at 1320.084 kb on - strand, within SM_b20912at 1320.142 kb on + strand, within SM_b20912at 1320.142 kb on + strand, within SM_b20912at 1320.143 kb on - strand, within SM_b20912at 1320.143 kb on - strand, within SM_b20912at 1320.174 kb on + strand, within SM_b20912at 1320.174 kb on + strand, within SM_b20912at 1320.175 kb on - strand, within SM_b20912at 1320.175 kb on - strand, within SM_b20912at 1320.175 kb on - strand, within SM_b20912at 1320.266 kb on - strand, within SM_b20912at 1320.318 kb on + strand, within SM_b20912at 1320.319 kb on - strand, within SM_b20912at 1320.507 kb on + strand, within SM_b20912at 1320.525 kb on + strand, within SM_b20912at 1320.525 kb on + strand, within SM_b20912at 1320.722 kb on + strand, within SM_b20912at 1320.722 kb on + strand, within SM_b20912

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,318,581 + +0.1
1,318,718 + +0.1
1,318,826 + SM_b20909 0.45 -0.0
1,318,827 - SM_b20909 0.45 +0.0
1,318,963 + -0.3
1,318,963 + -0.9
1,318,964 - +0.1
1,319,022 + +1.3
1,319,027 + +0.1
1,319,048 + +0.5
1,319,130 + SM_b20910 0.27 +0.0
1,319,131 - SM_b20910 0.27 -0.1
1,319,131 - SM_b20910 0.27 +2.1
1,319,178 + SM_b20910 0.42 +0.9
1,319,178 + SM_b20910 0.42 +0.1
1,319,179 - SM_b20910 0.43 +0.2
1,319,254 + SM_b20910 0.67 -0.1
1,319,269 + SM_b20910 0.72 +0.2
1,319,270 - SM_b20910 0.72 +0.2
1,319,270 - SM_b20910 0.72 +0.2
1,319,416 + +0.1
1,319,419 - -0.1
1,319,419 - -0.3
1,319,419 - -0.4
1,319,422 + +0.9
1,319,422 + -0.9
1,319,422 + +0.2
1,319,422 + -0.1
1,319,422 + -0.3
1,319,423 - +0.3
1,319,423 - +0.3
1,319,423 - -0.4
1,319,423 - +0.0
1,319,423 - +1.1
1,319,428 + -1.3
1,319,428 + +0.4
1,319,429 - +0.0
1,319,429 - +0.1
1,319,432 + -1.3
1,319,432 + +0.3
1,319,432 + +2.5
1,319,433 - -0.4
1,319,599 + -0.5
1,319,599 + +1.5
1,319,599 + -1.3
1,319,599 + -0.7
1,319,600 - -0.2
1,319,664 + SM_b20911 0.41 -0.5
1,319,664 + SM_b20911 0.41 -0.9
1,319,665 - SM_b20911 0.41 +0.4
1,319,665 - SM_b20911 0.41 -0.6
1,319,665 - SM_b20911 0.41 +0.1
1,319,665 - SM_b20911 0.41 +0.5
1,319,666 + SM_b20911 0.42 -1.2
1,319,666 + SM_b20911 0.42 -1.1
1,319,667 - SM_b20911 0.42 -1.1
1,319,667 - SM_b20911 0.42 -0.7
1,319,695 + SM_b20911 0.56 -1.4
1,319,696 - SM_b20911 0.56 +0.5
1,319,696 - SM_b20911 0.56 +0.1
1,319,762 + SM_b20911 0.88 -1.1
1,319,763 - SM_b20911 0.88 -0.0
1,319,931 - SM_b20912 0.11 -0.2
1,319,945 + SM_b20912 0.12 -0.5
1,319,945 + SM_b20912 0.12 -0.2
1,320,083 + SM_b20912 0.25 -0.2
1,320,083 + SM_b20912 0.25 -0.2
1,320,084 - SM_b20912 0.25 +0.1
1,320,084 - SM_b20912 0.25 +0.7
1,320,142 + SM_b20912 0.30 -0.1
1,320,142 + SM_b20912 0.30 -0.2
1,320,143 - SM_b20912 0.30 +0.4
1,320,143 - SM_b20912 0.30 +0.5
1,320,174 + SM_b20912 0.33 +0.1
1,320,174 + SM_b20912 0.33 +0.3
1,320,175 - SM_b20912 0.33 +0.1
1,320,175 - SM_b20912 0.33 +0.0
1,320,175 - SM_b20912 0.33 -1.0
1,320,266 - SM_b20912 0.42 -0.7
1,320,318 + SM_b20912 0.46 +0.6
1,320,319 - SM_b20912 0.46 -0.1
1,320,507 + SM_b20912 0.64 +0.1
1,320,525 + SM_b20912 0.65 +0.6
1,320,525 + SM_b20912 0.65 +0.4
1,320,722 + SM_b20912 0.83 -0.8
1,320,722 + SM_b20912 0.83 -0.7

Or see this region's nucleotide sequence