Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20698

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20697 and SM_b20698 are separated by 151 nucleotidesSM_b20698 and SM_b20699 overlap by 4 nucleotides SM_b20697: SM_b20697 - peptidase, arginine utilization protein RocB, at 1,496,855 to 1,498,549 _b20697 SM_b20698: SM_b20698 - transporter, at 1,498,701 to 1,500,353 _b20698 SM_b20699: SM_b20699 - protein secretion protein, at 1,500,350 to 1,501,447 _b20699 Position (kb) 1498 1499 1500 1501Strain fitness (log2 ratio) -2 -1 0 1 2at 1497.780 kb on + strand, within SM_b20697at 1497.781 kb on - strand, within SM_b20697at 1497.822 kb on - strand, within SM_b20697at 1498.239 kb on + strand, within SM_b20697at 1498.239 kb on + strand, within SM_b20697at 1498.239 kb on + strand, within SM_b20697at 1498.240 kb on - strand, within SM_b20697at 1498.240 kb on - strand, within SM_b20697at 1498.479 kb on - strandat 1498.702 kb on + strandat 1498.703 kb on - strandat 1499.098 kb on - strand, within SM_b20698at 1499.098 kb on - strand, within SM_b20698at 1499.123 kb on + strand, within SM_b20698at 1499.687 kb on - strand, within SM_b20698at 1500.170 kb on - strand, within SM_b20698at 1500.208 kb on + strandat 1500.208 kb on + strandat 1500.209 kb on - strandat 1500.209 kb on - strandat 1500.209 kb on - strandat 1500.209 kb on - strandat 1500.224 kb on + strandat 1500.286 kb on - strandat 1500.318 kb on + strandat 1500.318 kb on + strandat 1500.319 kb on - strandat 1500.565 kb on - strand, within SM_b20699at 1500.644 kb on + strand, within SM_b20699at 1500.644 kb on + strand, within SM_b20699at 1500.645 kb on - strand, within SM_b20699at 1500.645 kb on - strand, within SM_b20699at 1500.645 kb on - strand, within SM_b20699at 1500.665 kb on - strand, within SM_b20699at 1500.981 kb on + strand, within SM_b20699at 1501.247 kb on - strand, within SM_b20699at 1501.263 kb on + strand, within SM_b20699at 1501.264 kb on - strand, within SM_b20699

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,497,780 + SM_b20697 0.55 -0.1
1,497,781 - SM_b20697 0.55 -0.5
1,497,822 - SM_b20697 0.57 +1.8
1,498,239 + SM_b20697 0.82 +0.1
1,498,239 + SM_b20697 0.82 +0.5
1,498,239 + SM_b20697 0.82 -0.4
1,498,240 - SM_b20697 0.82 +0.3
1,498,240 - SM_b20697 0.82 -0.8
1,498,479 - +0.5
1,498,702 + +0.6
1,498,703 - -0.2
1,499,098 - SM_b20698 0.24 -0.8
1,499,098 - SM_b20698 0.24 -1.2
1,499,123 + SM_b20698 0.26 +0.1
1,499,687 - SM_b20698 0.60 +0.1
1,500,170 - SM_b20698 0.89 -1.8
1,500,208 + -1.0
1,500,208 + +0.7
1,500,209 - +0.1
1,500,209 - +0.9
1,500,209 - -0.3
1,500,209 - -0.2
1,500,224 + +0.6
1,500,286 - -0.3
1,500,318 + -0.0
1,500,318 + -0.7
1,500,319 - +0.1
1,500,565 - SM_b20699 0.20 -0.5
1,500,644 + SM_b20699 0.27 +0.3
1,500,644 + SM_b20699 0.27 -0.2
1,500,645 - SM_b20699 0.27 -1.3
1,500,645 - SM_b20699 0.27 +0.2
1,500,645 - SM_b20699 0.27 +0.5
1,500,665 - SM_b20699 0.29 +0.2
1,500,981 + SM_b20699 0.57 -0.0
1,501,247 - SM_b20699 0.82 +0.7
1,501,263 + SM_b20699 0.83 -0.2
1,501,264 - SM_b20699 0.83 -0.2

Or see this region's nucleotide sequence